Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3391

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3390 and EX28DRAFT_3391 are separated by 311 nucleotidesEX28DRAFT_3391 and EX28DRAFT_3392 are separated by 96 nucleotides EX28DRAFT_3390: EX28DRAFT_3390 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 57,213 to 57,833 _3390 EX28DRAFT_3391: EX28DRAFT_3391 - Gamma-aminobutyrate permease and related permeases, at 58,145 to 59,554 _3391 EX28DRAFT_3392: EX28DRAFT_3392 - iron-sulfur cluster repair di-iron protein, at 59,651 to 60,313 _3392 Position (kb) 58 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 57.174 kb on - strandat 57.174 kb on - strandat 57.190 kb on + strandat 57.191 kb on - strandat 57.191 kb on - strandat 57.313 kb on + strand, within EX28DRAFT_3390at 57.472 kb on - strand, within EX28DRAFT_3390at 57.591 kb on + strand, within EX28DRAFT_3390at 57.592 kb on - strand, within EX28DRAFT_3390at 57.744 kb on - strand, within EX28DRAFT_3390at 57.831 kb on + strandat 57.883 kb on - strandat 57.891 kb on + strandat 58.012 kb on + strandat 58.020 kb on - strandat 58.045 kb on + strandat 58.111 kb on + strandat 58.111 kb on + strandat 58.150 kb on - strandat 58.150 kb on - strandat 58.225 kb on + strandat 58.322 kb on + strand, within EX28DRAFT_3391at 58.324 kb on + strand, within EX28DRAFT_3391at 58.340 kb on - strand, within EX28DRAFT_3391at 58.735 kb on + strand, within EX28DRAFT_3391at 58.809 kb on + strand, within EX28DRAFT_3391at 58.809 kb on + strand, within EX28DRAFT_3391at 58.892 kb on - strand, within EX28DRAFT_3391at 58.910 kb on - strand, within EX28DRAFT_3391at 58.910 kb on - strand, within EX28DRAFT_3391at 58.922 kb on + strand, within EX28DRAFT_3391at 58.923 kb on - strand, within EX28DRAFT_3391at 58.923 kb on - strand, within EX28DRAFT_3391at 58.923 kb on - strand, within EX28DRAFT_3391at 58.923 kb on - strand, within EX28DRAFT_3391at 58.946 kb on - strand, within EX28DRAFT_3391at 58.946 kb on - strand, within EX28DRAFT_3391at 59.014 kb on - strand, within EX28DRAFT_3391at 59.041 kb on + strand, within EX28DRAFT_3391at 59.041 kb on + strand, within EX28DRAFT_3391at 59.042 kb on - strand, within EX28DRAFT_3391at 59.231 kb on + strand, within EX28DRAFT_3391at 59.232 kb on - strand, within EX28DRAFT_3391at 59.263 kb on + strand, within EX28DRAFT_3391at 59.294 kb on - strand, within EX28DRAFT_3391at 59.294 kb on - strand, within EX28DRAFT_3391at 59.334 kb on - strand, within EX28DRAFT_3391at 59.372 kb on + strand, within EX28DRAFT_3391at 59.372 kb on + strand, within EX28DRAFT_3391at 59.373 kb on - strand, within EX28DRAFT_3391at 59.536 kb on + strandat 59.553 kb on - strandat 59.553 kb on - strandat 59.663 kb on + strandat 59.723 kb on - strand, within EX28DRAFT_3392at 59.742 kb on + strand, within EX28DRAFT_3392at 59.743 kb on - strand, within EX28DRAFT_3392at 59.891 kb on + strand, within EX28DRAFT_3392at 59.892 kb on - strand, within EX28DRAFT_3392at 59.927 kb on - strand, within EX28DRAFT_3392at 59.927 kb on - strand, within EX28DRAFT_3392at 59.961 kb on + strand, within EX28DRAFT_3392at 60.062 kb on - strand, within EX28DRAFT_3392at 60.241 kb on - strand, within EX28DRAFT_3392at 60.241 kb on - strand, within EX28DRAFT_3392at 60.314 kb on - strandat 60.335 kb on - strandat 60.374 kb on + strandat 60.375 kb on - strandat 60.375 kb on - strandat 60.375 kb on - strandat 60.451 kb on + strandat 60.451 kb on + strandat 60.452 kb on - strandat 60.452 kb on - strandat 60.452 kb on - strandat 60.484 kb on - strandat 60.484 kb on - strandat 60.516 kb on + strandat 60.518 kb on + strandat 60.519 kb on - strandat 60.519 kb on - strandat 60.541 kb on + strandat 60.541 kb on + strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.542 kb on - strandat 60.543 kb on + strandat 60.543 kb on + strandat 60.544 kb on - strandat 60.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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57,174 - +0.2
57,174 - +0.1
57,190 + +0.1
57,191 - -0.3
57,191 - +0.6
57,313 + EX28DRAFT_3390 0.16 +1.3
57,472 - EX28DRAFT_3390 0.42 +0.6
57,591 + EX28DRAFT_3390 0.61 +0.7
57,592 - EX28DRAFT_3390 0.61 +0.0
57,744 - EX28DRAFT_3390 0.86 +0.3
57,831 + -0.3
57,883 - +0.6
57,891 + -0.9
58,012 + -2.2
58,020 - +0.1
58,045 + -2.2
58,111 + -2.4
58,111 + -1.9
58,150 - +1.6
58,150 - +1.1
58,225 + +1.0
58,322 + EX28DRAFT_3391 0.13 -0.0
58,324 + EX28DRAFT_3391 0.13 +0.6
58,340 - EX28DRAFT_3391 0.14 +1.2
58,735 + EX28DRAFT_3391 0.42 +1.3
58,809 + EX28DRAFT_3391 0.47 +0.7
58,809 + EX28DRAFT_3391 0.47 +1.2
58,892 - EX28DRAFT_3391 0.53 +2.1
58,910 - EX28DRAFT_3391 0.54 +0.1
58,910 - EX28DRAFT_3391 0.54 +1.1
58,922 + EX28DRAFT_3391 0.55 +1.3
58,923 - EX28DRAFT_3391 0.55 +0.6
58,923 - EX28DRAFT_3391 0.55 -0.1
58,923 - EX28DRAFT_3391 0.55 +1.0
58,923 - EX28DRAFT_3391 0.55 +1.0
58,946 - EX28DRAFT_3391 0.57 +0.5
58,946 - EX28DRAFT_3391 0.57 +1.2
59,014 - EX28DRAFT_3391 0.62 +1.0
59,041 + EX28DRAFT_3391 0.64 +1.0
59,041 + EX28DRAFT_3391 0.64 +0.5
59,042 - EX28DRAFT_3391 0.64 -1.8
59,231 + EX28DRAFT_3391 0.77 +1.7
59,232 - EX28DRAFT_3391 0.77 +0.7
59,263 + EX28DRAFT_3391 0.79 +3.5
59,294 - EX28DRAFT_3391 0.81 +1.0
59,294 - EX28DRAFT_3391 0.81 +2.1
59,334 - EX28DRAFT_3391 0.84 +1.3
59,372 + EX28DRAFT_3391 0.87 +1.0
59,372 + EX28DRAFT_3391 0.87 +1.2
59,373 - EX28DRAFT_3391 0.87 +0.9
59,536 + +1.7
59,553 - +0.4
59,553 - -0.2
59,663 + +0.9
59,723 - EX28DRAFT_3392 0.11 +0.5
59,742 + EX28DRAFT_3392 0.14 -2.3
59,743 - EX28DRAFT_3392 0.14 +0.9
59,891 + EX28DRAFT_3392 0.36 -0.5
59,892 - EX28DRAFT_3392 0.36 -0.4
59,927 - EX28DRAFT_3392 0.42 +0.1
59,927 - EX28DRAFT_3392 0.42 +0.5
59,961 + EX28DRAFT_3392 0.47 -0.4
60,062 - EX28DRAFT_3392 0.62 +0.7
60,241 - EX28DRAFT_3392 0.89 +0.0
60,241 - EX28DRAFT_3392 0.89 -0.4
60,314 - -0.8
60,335 - -0.2
60,374 + +0.6
60,375 - -0.7
60,375 - -0.6
60,375 - +0.9
60,451 + -3.6
60,451 + +0.9
60,452 - +0.3
60,452 - +0.2
60,452 - +0.7
60,484 - +0.6
60,484 - +0.7
60,516 + -1.1
60,518 + -0.3
60,519 - +0.7
60,519 - +0.3
60,541 + -1.0
60,541 + -0.0
60,542 - -0.3
60,542 - +1.3
60,542 - +1.5
60,542 - -0.0
60,543 + -0.0
60,543 + +0.2
60,544 - -0.1
60,544 - +0.3

Or see this region's nucleotide sequence