Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3388 and EX28DRAFT_3389 are separated by 67 nucleotides EX28DRAFT_3389 and EX28DRAFT_3390 are separated by 233 nucleotides EX28DRAFT_3390 and EX28DRAFT_3391 are separated by 311 nucleotides
EX28DRAFT_3388: EX28DRAFT_3388 - ribosomal protein L9, at 55,818 to 56,267
_3388
EX28DRAFT_3389: EX28DRAFT_3389 - Cell envelope opacity-associated protein A, at 56,335 to 56,979
_3389
EX28DRAFT_3390: EX28DRAFT_3390 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 57,213 to 57,833
_3390
EX28DRAFT_3391: EX28DRAFT_3391 - Gamma-aminobutyrate permease and related permeases, at 58,145 to 59,554
_3391
Position (kb) 57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 56.321 kb on + strand at 56.513 kb on + strand, within EX28DRAFT_3389 at 56.952 kb on + strand at 56.953 kb on - strand at 57.027 kb on - strand at 57.035 kb on - strand at 57.096 kb on + strand at 57.103 kb on - strand at 57.103 kb on - strand at 57.174 kb on - strand at 57.174 kb on - strand at 57.190 kb on + strand at 57.191 kb on - strand at 57.191 kb on - strand at 57.313 kb on + strand, within EX28DRAFT_3390 at 57.472 kb on - strand, within EX28DRAFT_3390 at 57.591 kb on + strand, within EX28DRAFT_3390 at 57.592 kb on - strand, within EX28DRAFT_3390 at 57.744 kb on - strand, within EX28DRAFT_3390 at 57.831 kb on + strand at 57.883 kb on - strand at 57.891 kb on + strand at 58.012 kb on + strand at 58.020 kb on - strand at 58.045 kb on + strand at 58.111 kb on + strand at 58.111 kb on + strand at 58.150 kb on - strand at 58.150 kb on - strand at 58.225 kb on + strand at 58.322 kb on + strand, within EX28DRAFT_3391 at 58.324 kb on + strand, within EX28DRAFT_3391 at 58.340 kb on - strand, within EX28DRAFT_3391 at 58.735 kb on + strand, within EX28DRAFT_3391 at 58.809 kb on + strand, within EX28DRAFT_3391 at 58.809 kb on + strand, within EX28DRAFT_3391
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 56,321 + -0.1 56,513 + EX28DRAFT_3389 0.28 +0.6 56,952 + -0.7 56,953 - -0.4 57,027 - -0.9 57,035 - -0.4 57,096 + -2.2 57,103 - -1.0 57,103 - -0.3 57,174 - +0.2 57,174 - +0.1 57,190 + +0.1 57,191 - -0.3 57,191 - +0.6 57,313 + EX28DRAFT_3390 0.16 +1.3 57,472 - EX28DRAFT_3390 0.42 +0.6 57,591 + EX28DRAFT_3390 0.61 +0.7 57,592 - EX28DRAFT_3390 0.61 +0.0 57,744 - EX28DRAFT_3390 0.86 +0.3 57,831 + -0.3 57,883 - +0.6 57,891 + -0.9 58,012 + -2.2 58,020 - +0.1 58,045 + -2.2 58,111 + -2.4 58,111 + -1.9 58,150 - +1.6 58,150 - +1.1 58,225 + +1.0 58,322 + EX28DRAFT_3391 0.13 -0.0 58,324 + EX28DRAFT_3391 0.13 +0.6 58,340 - EX28DRAFT_3391 0.14 +1.2 58,735 + EX28DRAFT_3391 0.42 +1.3 58,809 + EX28DRAFT_3391 0.47 +0.7 58,809 + EX28DRAFT_3391 0.47 +1.2
Or see this region's nucleotide sequence