Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3378 and EX28DRAFT_3379 are separated by 192 nucleotides EX28DRAFT_3379 and EX28DRAFT_3380 overlap by 4 nucleotides
EX28DRAFT_3378: EX28DRAFT_3378 - Arabinose efflux permease, at 47,238 to 48,512
_3378
EX28DRAFT_3379: EX28DRAFT_3379 - Acyl-CoA dehydrogenases, at 48,705 to 50,327
_3379
EX28DRAFT_3380: EX28DRAFT_3380 - Methyl-accepting chemotaxis protein, at 50,324 to 52,255
_3380
Position (kb) 48
49
50
51 Strain fitness (log2 ratio) -1
0
1 at 47.771 kb on - strand, within EX28DRAFT_3378 at 47.862 kb on - strand, within EX28DRAFT_3378 at 48.167 kb on + strand, within EX28DRAFT_3378 at 48.168 kb on - strand, within EX28DRAFT_3378 at 48.170 kb on + strand, within EX28DRAFT_3378 at 48.352 kb on + strand, within EX28DRAFT_3378 at 48.353 kb on - strand, within EX28DRAFT_3378 at 48.353 kb on - strand, within EX28DRAFT_3378 at 48.353 kb on - strand, within EX28DRAFT_3378 at 48.483 kb on + strand at 48.484 kb on - strand at 48.484 kb on - strand at 48.526 kb on + strand at 48.670 kb on - strand at 48.673 kb on + strand at 48.674 kb on - strand at 48.854 kb on - strand at 49.327 kb on - strand, within EX28DRAFT_3379 at 49.343 kb on + strand, within EX28DRAFT_3379 at 49.343 kb on + strand, within EX28DRAFT_3379 at 49.659 kb on + strand, within EX28DRAFT_3379 at 49.660 kb on - strand, within EX28DRAFT_3379 at 49.660 kb on - strand, within EX28DRAFT_3379 at 49.726 kb on + strand, within EX28DRAFT_3379 at 49.862 kb on + strand, within EX28DRAFT_3379 at 49.971 kb on - strand, within EX28DRAFT_3379 at 49.991 kb on + strand, within EX28DRAFT_3379 at 49.992 kb on - strand, within EX28DRAFT_3379 at 50.130 kb on - strand, within EX28DRAFT_3379 at 50.428 kb on + strand at 50.429 kb on - strand at 50.534 kb on - strand, within EX28DRAFT_3380 at 50.624 kb on + strand, within EX28DRAFT_3380 at 51.118 kb on + strand, within EX28DRAFT_3380 at 51.119 kb on - strand, within EX28DRAFT_3380 at 51.119 kb on - strand, within EX28DRAFT_3380
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 47,771 - EX28DRAFT_3378 0.42 +0.1 47,862 - EX28DRAFT_3378 0.49 +0.1 48,167 + EX28DRAFT_3378 0.73 +1.1 48,168 - EX28DRAFT_3378 0.73 +0.9 48,170 + EX28DRAFT_3378 0.73 +0.1 48,352 + EX28DRAFT_3378 0.87 +0.1 48,353 - EX28DRAFT_3378 0.87 +0.1 48,353 - EX28DRAFT_3378 0.87 +0.4 48,353 - EX28DRAFT_3378 0.87 -0.4 48,483 + -0.2 48,484 - -0.9 48,484 - -0.1 48,526 + +0.8 48,670 - -1.1 48,673 + +0.3 48,674 - -0.7 48,854 - +0.2 49,327 - EX28DRAFT_3379 0.38 +0.4 49,343 + EX28DRAFT_3379 0.39 +0.0 49,343 + EX28DRAFT_3379 0.39 -0.1 49,659 + EX28DRAFT_3379 0.59 -0.3 49,660 - EX28DRAFT_3379 0.59 +0.1 49,660 - EX28DRAFT_3379 0.59 +0.7 49,726 + EX28DRAFT_3379 0.63 -0.2 49,862 + EX28DRAFT_3379 0.71 +1.0 49,971 - EX28DRAFT_3379 0.78 -0.2 49,991 + EX28DRAFT_3379 0.79 +0.6 49,992 - EX28DRAFT_3379 0.79 +0.3 50,130 - EX28DRAFT_3379 0.88 -0.2 50,428 + +0.9 50,429 - +1.0 50,534 - EX28DRAFT_3380 0.11 +0.9 50,624 + EX28DRAFT_3380 0.16 -0.1 51,118 + EX28DRAFT_3380 0.41 +0.4 51,119 - EX28DRAFT_3380 0.41 +0.5 51,119 - EX28DRAFT_3380 0.41 -0.1
Or see this region's nucleotide sequence