Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3375

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3374 and EX28DRAFT_3375 are separated by 192 nucleotidesEX28DRAFT_3375 and EX28DRAFT_3376 are separated by 38 nucleotides EX28DRAFT_3374: EX28DRAFT_3374 - Adenylosuccinate synthetase (EC 6.3.4.4), at 41,910 to 43,250 _3374 EX28DRAFT_3375: EX28DRAFT_3375 - transcriptional regulator, BadM/Rrf2 family, at 43,443 to 43,868 _3375 EX28DRAFT_3376: EX28DRAFT_3376 - ribonuclease R, at 43,907 to 46,351 _3376 Position (kb) 43 44Strain fitness (log2 ratio) -1 0 1 2at 43.248 kb on + strandat 43.298 kb on + strandat 43.353 kb on + strandat 43.391 kb on + strandat 43.399 kb on - strandat 43.474 kb on + strandat 43.565 kb on + strand, within EX28DRAFT_3375at 43.661 kb on + strand, within EX28DRAFT_3375at 43.806 kb on + strand, within EX28DRAFT_3375at 43.847 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 44.037 kb on + strandat 44.038 kb on - strandat 44.526 kb on + strand, within EX28DRAFT_3376at 44.526 kb on + strand, within EX28DRAFT_3376at 44.756 kb on + strand, within EX28DRAFT_3376at 44.811 kb on + strand, within EX28DRAFT_3376at 44.812 kb on - strand, within EX28DRAFT_3376at 44.819 kb on + strand, within EX28DRAFT_3376at 44.820 kb on - strand, within EX28DRAFT_3376

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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43,248 + -1.4
43,298 + -1.5
43,353 + -0.3
43,391 + +1.8
43,399 - +0.4
43,474 + +1.8
43,565 + EX28DRAFT_3375 0.29 +0.6
43,661 + EX28DRAFT_3375 0.51 -0.0
43,806 + EX28DRAFT_3375 0.85 +1.8
43,847 + +1.1
43,852 + +0.8
43,852 + +1.1
43,852 + +0.5
44,037 + +0.4
44,038 - -0.1
44,526 + EX28DRAFT_3376 0.25 -0.4
44,526 + EX28DRAFT_3376 0.25 -0.7
44,756 + EX28DRAFT_3376 0.35 +0.3
44,811 + EX28DRAFT_3376 0.37 -1.0
44,812 - EX28DRAFT_3376 0.37 -0.9
44,819 + EX28DRAFT_3376 0.37 -0.9
44,820 - EX28DRAFT_3376 0.37 -0.7

Or see this region's nucleotide sequence