Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3363

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3360 and EX28DRAFT_3361 are separated by 196 nucleotidesEX28DRAFT_3361 and EX28DRAFT_3362 are separated by 37 nucleotidesEX28DRAFT_3362 and EX28DRAFT_3363 are separated by 270 nucleotidesEX28DRAFT_3363 and EX28DRAFT_3364 are separated by 13 nucleotides EX28DRAFT_3360: EX28DRAFT_3360 - Oligoribonuclease (3'->5' exoribonuclease), at 29,033 to 29,578 _3360 EX28DRAFT_3361: EX28DRAFT_3361 - tRNA, at 29,775 to 29,850 _3361 EX28DRAFT_3362: EX28DRAFT_3362 - tRNA, at 29,888 to 29,963 _3362 EX28DRAFT_3363: EX28DRAFT_3363 - epoxyqueuosine reductase, at 30,234 to 31,373 _3363 EX28DRAFT_3364: EX28DRAFT_3364 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 31,387 to 32,895 _3364 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 29.566 kb on + strandat 29.619 kb on + strandat 29.620 kb on - strandat 29.645 kb on - strandat 29.739 kb on + strandat 29.974 kb on - strandat 30.297 kb on + strandat 30.297 kb on + strandat 30.351 kb on + strand, within EX28DRAFT_3363at 30.352 kb on - strand, within EX28DRAFT_3363at 30.352 kb on - strand, within EX28DRAFT_3363at 30.383 kb on + strand, within EX28DRAFT_3363at 30.449 kb on + strand, within EX28DRAFT_3363at 30.450 kb on - strand, within EX28DRAFT_3363at 30.563 kb on + strand, within EX28DRAFT_3363at 30.642 kb on + strand, within EX28DRAFT_3363at 30.644 kb on - strand, within EX28DRAFT_3363at 30.659 kb on + strand, within EX28DRAFT_3363at 30.699 kb on + strand, within EX28DRAFT_3363at 30.699 kb on + strand, within EX28DRAFT_3363at 30.700 kb on - strand, within EX28DRAFT_3363at 30.700 kb on - strand, within EX28DRAFT_3363at 30.739 kb on + strand, within EX28DRAFT_3363at 30.887 kb on + strand, within EX28DRAFT_3363at 30.888 kb on - strand, within EX28DRAFT_3363at 30.888 kb on - strand, within EX28DRAFT_3363at 30.900 kb on - strand, within EX28DRAFT_3363at 30.947 kb on + strand, within EX28DRAFT_3363at 31.002 kb on - strand, within EX28DRAFT_3363at 31.032 kb on + strand, within EX28DRAFT_3363at 31.032 kb on + strand, within EX28DRAFT_3363at 31.033 kb on - strand, within EX28DRAFT_3363at 31.040 kb on + strand, within EX28DRAFT_3363at 31.040 kb on + strand, within EX28DRAFT_3363at 31.041 kb on - strand, within EX28DRAFT_3363at 31.041 kb on - strand, within EX28DRAFT_3363at 31.045 kb on + strand, within EX28DRAFT_3363at 31.075 kb on + strand, within EX28DRAFT_3363at 31.096 kb on - strand, within EX28DRAFT_3363at 31.129 kb on + strand, within EX28DRAFT_3363at 31.129 kb on + strand, within EX28DRAFT_3363at 31.129 kb on + strand, within EX28DRAFT_3363at 31.129 kb on + strand, within EX28DRAFT_3363at 31.130 kb on - strand, within EX28DRAFT_3363at 31.155 kb on + strand, within EX28DRAFT_3363at 31.156 kb on - strand, within EX28DRAFT_3363at 31.231 kb on + strand, within EX28DRAFT_3363at 31.232 kb on - strand, within EX28DRAFT_3363at 31.333 kb on - strandat 31.407 kb on + strandat 31.521 kb on + strandat 31.600 kb on + strand, within EX28DRAFT_3364at 31.797 kb on - strand, within EX28DRAFT_3364at 31.843 kb on - strand, within EX28DRAFT_3364at 31.939 kb on - strand, within EX28DRAFT_3364at 31.939 kb on - strand, within EX28DRAFT_3364at 32.149 kb on - strand, within EX28DRAFT_3364at 32.205 kb on - strand, within EX28DRAFT_3364at 32.340 kb on - strand, within EX28DRAFT_3364at 32.340 kb on - strand, within EX28DRAFT_3364at 32.340 kb on - strand, within EX28DRAFT_3364

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
29,566 + +0.2
29,619 + -0.1
29,620 - -0.6
29,645 - +0.4
29,739 + -1.9
29,974 - +0.6
30,297 + -0.1
30,297 + -0.3
30,351 + EX28DRAFT_3363 0.10 +0.4
30,352 - EX28DRAFT_3363 0.10 -1.2
30,352 - EX28DRAFT_3363 0.10 -0.8
30,383 + EX28DRAFT_3363 0.13 -0.6
30,449 + EX28DRAFT_3363 0.19 +0.5
30,450 - EX28DRAFT_3363 0.19 -0.4
30,563 + EX28DRAFT_3363 0.29 -0.2
30,642 + EX28DRAFT_3363 0.36 -0.1
30,644 - EX28DRAFT_3363 0.36 -1.3
30,659 + EX28DRAFT_3363 0.37 +0.5
30,699 + EX28DRAFT_3363 0.41 +0.7
30,699 + EX28DRAFT_3363 0.41 -0.0
30,700 - EX28DRAFT_3363 0.41 -0.3
30,700 - EX28DRAFT_3363 0.41 -0.5
30,739 + EX28DRAFT_3363 0.44 -0.0
30,887 + EX28DRAFT_3363 0.57 +0.5
30,888 - EX28DRAFT_3363 0.57 -0.9
30,888 - EX28DRAFT_3363 0.57 +0.5
30,900 - EX28DRAFT_3363 0.58 +0.7
30,947 + EX28DRAFT_3363 0.63 +0.1
31,002 - EX28DRAFT_3363 0.67 +0.8
31,032 + EX28DRAFT_3363 0.70 +0.5
31,032 + EX28DRAFT_3363 0.70 +0.2
31,033 - EX28DRAFT_3363 0.70 -0.8
31,040 + EX28DRAFT_3363 0.71 +0.4
31,040 + EX28DRAFT_3363 0.71 -0.5
31,041 - EX28DRAFT_3363 0.71 -0.0
31,041 - EX28DRAFT_3363 0.71 +0.4
31,045 + EX28DRAFT_3363 0.71 +0.3
31,075 + EX28DRAFT_3363 0.74 -0.9
31,096 - EX28DRAFT_3363 0.76 -1.1
31,129 + EX28DRAFT_3363 0.79 +0.9
31,129 + EX28DRAFT_3363 0.79 -0.5
31,129 + EX28DRAFT_3363 0.79 -0.4
31,129 + EX28DRAFT_3363 0.79 -0.1
31,130 - EX28DRAFT_3363 0.79 -0.6
31,155 + EX28DRAFT_3363 0.81 -0.7
31,156 - EX28DRAFT_3363 0.81 -0.3
31,231 + EX28DRAFT_3363 0.87 +0.2
31,232 - EX28DRAFT_3363 0.88 -0.4
31,333 - -1.0
31,407 + -0.3
31,521 + +0.3
31,600 + EX28DRAFT_3364 0.14 -0.1
31,797 - EX28DRAFT_3364 0.27 +0.1
31,843 - EX28DRAFT_3364 0.30 -0.3
31,939 - EX28DRAFT_3364 0.37 -1.8
31,939 - EX28DRAFT_3364 0.37 +0.1
32,149 - EX28DRAFT_3364 0.50 -0.3
32,205 - EX28DRAFT_3364 0.54 +0.1
32,340 - EX28DRAFT_3364 0.63 +0.4
32,340 - EX28DRAFT_3364 0.63 -0.9
32,340 - EX28DRAFT_3364 0.63 -1.0

Or see this region's nucleotide sequence