Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3336 and EX28DRAFT_3337 are separated by 308 nucleotides EX28DRAFT_3337 and EX28DRAFT_3338 are separated by 24 nucleotides
EX28DRAFT_3336: EX28DRAFT_3336 - aspartate ammonia-lyase, at 6,482 to 7,918
_3336
EX28DRAFT_3337: EX28DRAFT_3337 - Protein affecting phage T7 exclusion by the F plasmid, at 8,227 to 8,718
_3337
EX28DRAFT_3338: EX28DRAFT_3338 - Amino acid transporters, at 8,743 to 9,993
_3338
Position (kb)
8
9 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 7.292 kb on + strand, within EX28DRAFT_3336 at 7.292 kb on + strand, within EX28DRAFT_3336 at 7.293 kb on - strand, within EX28DRAFT_3336 at 7.293 kb on - strand, within EX28DRAFT_3336 at 7.449 kb on + strand, within EX28DRAFT_3336 at 7.449 kb on + strand, within EX28DRAFT_3336 at 7.449 kb on + strand, within EX28DRAFT_3336 at 7.450 kb on - strand, within EX28DRAFT_3336 at 7.450 kb on - strand, within EX28DRAFT_3336 at 7.527 kb on + strand, within EX28DRAFT_3336 at 7.580 kb on + strand, within EX28DRAFT_3336 at 7.591 kb on + strand, within EX28DRAFT_3336 at 7.592 kb on - strand, within EX28DRAFT_3336 at 7.627 kb on - strand, within EX28DRAFT_3336 at 7.816 kb on - strand at 7.851 kb on + strand at 7.851 kb on + strand at 7.851 kb on + strand at 7.852 kb on - strand at 7.855 kb on - strand at 7.900 kb on + strand at 7.952 kb on - strand at 7.966 kb on - strand at 7.970 kb on - strand at 7.970 kb on - strand at 8.033 kb on + strand at 8.093 kb on + strand at 8.097 kb on + strand at 8.098 kb on - strand at 8.098 kb on - strand at 8.098 kb on - strand at 8.098 kb on - strand at 8.397 kb on + strand, within EX28DRAFT_3337 at 8.423 kb on + strand, within EX28DRAFT_3337 at 8.665 kb on + strand, within EX28DRAFT_3337 at 8.674 kb on - strand at 8.697 kb on - strand at 8.813 kb on + strand at 8.884 kb on - strand, within EX28DRAFT_3338 at 8.884 kb on - strand, within EX28DRAFT_3338 at 8.885 kb on + strand, within EX28DRAFT_3338 at 8.930 kb on + strand, within EX28DRAFT_3338 at 8.930 kb on + strand, within EX28DRAFT_3338 at 8.930 kb on + strand, within EX28DRAFT_3338 at 8.930 kb on + strand, within EX28DRAFT_3338 at 8.979 kb on + strand, within EX28DRAFT_3338 at 8.980 kb on - strand, within EX28DRAFT_3338 at 8.993 kb on + strand, within EX28DRAFT_3338 at 8.994 kb on - strand, within EX28DRAFT_3338 at 8.997 kb on + strand, within EX28DRAFT_3338 at 9.135 kb on + strand, within EX28DRAFT_3338 at 9.138 kb on - strand, within EX28DRAFT_3338 at 9.138 kb on - strand, within EX28DRAFT_3338 at 9.138 kb on - strand, within EX28DRAFT_3338 at 9.274 kb on + strand, within EX28DRAFT_3338 at 9.275 kb on - strand, within EX28DRAFT_3338 at 9.299 kb on + strand, within EX28DRAFT_3338 at 9.299 kb on + strand, within EX28DRAFT_3338 at 9.300 kb on - strand, within EX28DRAFT_3338 at 9.325 kb on + strand, within EX28DRAFT_3338 at 9.326 kb on - strand, within EX28DRAFT_3338 at 9.326 kb on - strand, within EX28DRAFT_3338 at 9.629 kb on - strand, within EX28DRAFT_3338 at 9.629 kb on - strand, within EX28DRAFT_3338
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 7,292 + EX28DRAFT_3336 0.56 -0.3 7,292 + EX28DRAFT_3336 0.56 -0.2 7,293 - EX28DRAFT_3336 0.56 -0.4 7,293 - EX28DRAFT_3336 0.56 +0.1 7,449 + EX28DRAFT_3336 0.67 +0.1 7,449 + EX28DRAFT_3336 0.67 +1.0 7,449 + EX28DRAFT_3336 0.67 +0.4 7,450 - EX28DRAFT_3336 0.67 -1.5 7,450 - EX28DRAFT_3336 0.67 +0.2 7,527 + EX28DRAFT_3336 0.73 +0.1 7,580 + EX28DRAFT_3336 0.76 +2.1 7,591 + EX28DRAFT_3336 0.77 +0.3 7,592 - EX28DRAFT_3336 0.77 -1.3 7,627 - EX28DRAFT_3336 0.80 -0.0 7,816 - -0.2 7,851 + +0.1 7,851 + +0.3 7,851 + +1.5 7,852 - -0.2 7,855 - +0.3 7,900 + -0.2 7,952 - -0.4 7,966 - +0.1 7,970 - +0.5 7,970 - +0.5 8,033 + -0.2 8,093 + +0.3 8,097 + +2.3 8,098 - -0.2 8,098 - -1.5 8,098 - +1.2 8,098 - +0.3 8,397 + EX28DRAFT_3337 0.35 +0.5 8,423 + EX28DRAFT_3337 0.40 +0.9 8,665 + EX28DRAFT_3337 0.89 +1.1 8,674 - +0.5 8,697 - -0.2 8,813 + +0.0 8,884 - EX28DRAFT_3338 0.11 +0.0 8,884 - EX28DRAFT_3338 0.11 +0.5 8,885 + EX28DRAFT_3338 0.11 +0.1 8,930 + EX28DRAFT_3338 0.15 +1.3 8,930 + EX28DRAFT_3338 0.15 -0.2 8,930 + EX28DRAFT_3338 0.15 +1.3 8,930 + EX28DRAFT_3338 0.15 +1.2 8,979 + EX28DRAFT_3338 0.19 +0.0 8,980 - EX28DRAFT_3338 0.19 -2.1 8,993 + EX28DRAFT_3338 0.20 -0.7 8,994 - EX28DRAFT_3338 0.20 -0.3 8,997 + EX28DRAFT_3338 0.20 -0.1 9,135 + EX28DRAFT_3338 0.31 -0.1 9,138 - EX28DRAFT_3338 0.32 -0.4 9,138 - EX28DRAFT_3338 0.32 -0.1 9,138 - EX28DRAFT_3338 0.32 +0.5 9,274 + EX28DRAFT_3338 0.42 +1.6 9,275 - EX28DRAFT_3338 0.43 -0.7 9,299 + EX28DRAFT_3338 0.44 +0.2 9,299 + EX28DRAFT_3338 0.44 +0.2 9,300 - EX28DRAFT_3338 0.45 -0.4 9,325 + EX28DRAFT_3338 0.47 +1.1 9,326 - EX28DRAFT_3338 0.47 -0.6 9,326 - EX28DRAFT_3338 0.47 -0.1 9,629 - EX28DRAFT_3338 0.71 -0.4 9,629 - EX28DRAFT_3338 0.71 +0.7
Or see this region's nucleotide sequence