Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3333 and EX28DRAFT_3334 overlap by 25 nucleotides EX28DRAFT_3334 and EX28DRAFT_3335 are separated by 113 nucleotides
EX28DRAFT_3333: EX28DRAFT_3333 - Thiol:disulfide interchange protein, at 2,937 to 4,652
_3333
EX28DRAFT_3334: EX28DRAFT_3334 - Uncharacterized protein involved in tolerance to divalent cations, at 4,628 to 4,951
_3334
EX28DRAFT_3335: EX28DRAFT_3335 - anaerobic c4-dicarboxylate membrane transporter family protein, at 5,065 to 6,366
_3335
Position (kb) 4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3.644 kb on - strand, within EX28DRAFT_3333 at 3.644 kb on - strand, within EX28DRAFT_3333 at 3.644 kb on - strand, within EX28DRAFT_3333 at 3.644 kb on - strand, within EX28DRAFT_3333 at 3.685 kb on - strand, within EX28DRAFT_3333 at 3.688 kb on + strand, within EX28DRAFT_3333 at 3.688 kb on + strand, within EX28DRAFT_3333 at 3.689 kb on - strand, within EX28DRAFT_3333 at 3.689 kb on - strand, within EX28DRAFT_3333 at 3.689 kb on - strand, within EX28DRAFT_3333 at 3.689 kb on - strand, within EX28DRAFT_3333 at 3.904 kb on + strand, within EX28DRAFT_3333 at 3.904 kb on + strand, within EX28DRAFT_3333 at 3.905 kb on - strand, within EX28DRAFT_3333 at 3.905 kb on - strand, within EX28DRAFT_3333 at 3.905 kb on - strand, within EX28DRAFT_3333 at 3.934 kb on - strand, within EX28DRAFT_3333 at 3.970 kb on + strand, within EX28DRAFT_3333 at 3.971 kb on - strand, within EX28DRAFT_3333 at 3.994 kb on + strand, within EX28DRAFT_3333 at 3.994 kb on + strand, within EX28DRAFT_3333 at 3.998 kb on + strand, within EX28DRAFT_3333 at 3.998 kb on + strand, within EX28DRAFT_3333 at 3.998 kb on + strand, within EX28DRAFT_3333 at 3.999 kb on - strand, within EX28DRAFT_3333 at 4.073 kb on - strand, within EX28DRAFT_3333 at 4.215 kb on - strand, within EX28DRAFT_3333 at 4.354 kb on - strand, within EX28DRAFT_3333 at 4.354 kb on - strand, within EX28DRAFT_3333 at 4.477 kb on + strand, within EX28DRAFT_3333 at 4.477 kb on + strand, within EX28DRAFT_3333 at 4.477 kb on + strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.478 kb on - strand, within EX28DRAFT_3333 at 4.481 kb on - strand at 4.502 kb on + strand at 4.660 kb on - strand at 4.818 kb on + strand, within EX28DRAFT_3334 at 4.818 kb on + strand, within EX28DRAFT_3334 at 4.983 kb on + strand at 4.983 kb on + strand at 4.983 kb on + strand at 4.983 kb on + strand at 4.983 kb on + strand at 4.984 kb on - strand at 4.984 kb on - strand at 4.984 kb on - strand at 4.984 kb on - strand at 4.986 kb on - strand at 5.039 kb on + strand at 5.040 kb on - strand at 5.043 kb on + strand at 5.066 kb on + strand at 5.156 kb on + strand at 5.157 kb on - strand at 5.157 kb on - strand at 5.381 kb on + strand, within EX28DRAFT_3335 at 5.442 kb on + strand, within EX28DRAFT_3335 at 5.442 kb on + strand, within EX28DRAFT_3335 at 5.649 kb on - strand, within EX28DRAFT_3335 at 5.873 kb on + strand, within EX28DRAFT_3335 at 5.874 kb on - strand, within EX28DRAFT_3335
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 3,644 - EX28DRAFT_3333 0.41 -0.3 3,644 - EX28DRAFT_3333 0.41 +0.1 3,644 - EX28DRAFT_3333 0.41 -0.7 3,644 - EX28DRAFT_3333 0.41 -0.2 3,685 - EX28DRAFT_3333 0.44 -0.2 3,688 + EX28DRAFT_3333 0.44 -0.1 3,688 + EX28DRAFT_3333 0.44 +0.8 3,689 - EX28DRAFT_3333 0.44 +0.4 3,689 - EX28DRAFT_3333 0.44 -2.9 3,689 - EX28DRAFT_3333 0.44 +1.3 3,689 - EX28DRAFT_3333 0.44 -0.1 3,904 + EX28DRAFT_3333 0.56 +0.1 3,904 + EX28DRAFT_3333 0.56 -0.6 3,905 - EX28DRAFT_3333 0.56 -1.4 3,905 - EX28DRAFT_3333 0.56 +0.7 3,905 - EX28DRAFT_3333 0.56 +0.2 3,934 - EX28DRAFT_3333 0.58 -0.2 3,970 + EX28DRAFT_3333 0.60 -0.5 3,971 - EX28DRAFT_3333 0.60 -0.9 3,994 + EX28DRAFT_3333 0.62 +0.2 3,994 + EX28DRAFT_3333 0.62 -0.8 3,998 + EX28DRAFT_3333 0.62 -1.4 3,998 + EX28DRAFT_3333 0.62 -0.1 3,998 + EX28DRAFT_3333 0.62 +0.3 3,999 - EX28DRAFT_3333 0.62 +0.7 4,073 - EX28DRAFT_3333 0.66 -0.5 4,215 - EX28DRAFT_3333 0.74 +0.3 4,354 - EX28DRAFT_3333 0.83 -0.3 4,354 - EX28DRAFT_3333 0.83 -0.1 4,477 + EX28DRAFT_3333 0.90 -1.1 4,477 + EX28DRAFT_3333 0.90 -1.5 4,477 + EX28DRAFT_3333 0.90 -1.0 4,478 - EX28DRAFT_3333 0.90 +0.0 4,478 - EX28DRAFT_3333 0.90 -0.5 4,478 - EX28DRAFT_3333 0.90 +0.2 4,478 - EX28DRAFT_3333 0.90 -0.5 4,478 - EX28DRAFT_3333 0.90 -0.1 4,478 - EX28DRAFT_3333 0.90 -0.2 4,478 - EX28DRAFT_3333 0.90 -0.2 4,481 - -1.0 4,502 + +0.3 4,660 - -1.0 4,818 + EX28DRAFT_3334 0.59 -2.0 4,818 + EX28DRAFT_3334 0.59 -1.8 4,983 + -0.3 4,983 + +0.4 4,983 + -0.4 4,983 + -1.7 4,983 + -0.8 4,984 - +0.2 4,984 - -0.5 4,984 - -1.0 4,984 - -0.2 4,986 - +0.2 5,039 + -2.4 5,040 - -0.6 5,043 + -0.1 5,066 + -0.2 5,156 + +1.1 5,157 - -2.2 5,157 - +0.1 5,381 + EX28DRAFT_3335 0.24 -0.0 5,442 + EX28DRAFT_3335 0.29 -0.5 5,442 + EX28DRAFT_3335 0.29 +0.2 5,649 - EX28DRAFT_3335 0.45 -0.3 5,873 + EX28DRAFT_3335 0.62 -0.0 5,874 - EX28DRAFT_3335 0.62 +0.5
Or see this region's nucleotide sequence