Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3318 and EX28DRAFT_3319 are separated by 11 nucleotides EX28DRAFT_3319 and EX28DRAFT_3320 are separated by 303 nucleotides EX28DRAFT_3320 and EX28DRAFT_3321 are separated by 473 nucleotides
EX28DRAFT_3318: EX28DRAFT_3318 - RND family efflux transporter, MFP subunit, at 618,221 to 619,360
_3318
EX28DRAFT_3319: EX28DRAFT_3319 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 619,372 to 622,485
_3319
EX28DRAFT_3320: EX28DRAFT_3320 - hypothetical protein, at 622,789 to 623,010
_3320
EX28DRAFT_3321: EX28DRAFT_3321 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 623,484 to 624,509
_3321
Position (kb) 619
620
621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 618.474 kb on + strand, within EX28DRAFT_3318 at 618.475 kb on - strand, within EX28DRAFT_3318 at 618.495 kb on - strand, within EX28DRAFT_3318 at 618.515 kb on + strand, within EX28DRAFT_3318 at 618.516 kb on - strand, within EX28DRAFT_3318 at 618.527 kb on + strand, within EX28DRAFT_3318 at 618.624 kb on - strand, within EX28DRAFT_3318 at 618.624 kb on - strand, within EX28DRAFT_3318 at 618.641 kb on + strand, within EX28DRAFT_3318 at 618.641 kb on + strand, within EX28DRAFT_3318 at 618.718 kb on + strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318 at 618.852 kb on - strand, within EX28DRAFT_3318 at 619.187 kb on - strand, within EX28DRAFT_3318 at 619.413 kb on - strand at 619.549 kb on - strand at 619.600 kb on + strand at 619.600 kb on + strand at 619.600 kb on + strand at 619.600 kb on + strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.601 kb on - strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.602 kb on + strand at 619.603 kb on - strand at 619.603 kb on - strand at 619.603 kb on - strand at 619.603 kb on - strand at 619.603 kb on - strand at 619.841 kb on - strand, within EX28DRAFT_3319 at 619.841 kb on - strand, within EX28DRAFT_3319 at 620.245 kb on - strand, within EX28DRAFT_3319 at 620.289 kb on + strand, within EX28DRAFT_3319 at 620.290 kb on - strand, within EX28DRAFT_3319 at 620.339 kb on + strand, within EX28DRAFT_3319 at 620.340 kb on - strand, within EX28DRAFT_3319 at 620.344 kb on + strand, within EX28DRAFT_3319 at 620.345 kb on - strand, within EX28DRAFT_3319 at 620.437 kb on + strand, within EX28DRAFT_3319 at 620.437 kb on + strand, within EX28DRAFT_3319 at 620.544 kb on + strand, within EX28DRAFT_3319 at 620.544 kb on + strand, within EX28DRAFT_3319 at 620.545 kb on - strand, within EX28DRAFT_3319 at 620.545 kb on - strand, within EX28DRAFT_3319 at 620.577 kb on - strand, within EX28DRAFT_3319 at 620.892 kb on + strand, within EX28DRAFT_3319 at 620.917 kb on - strand, within EX28DRAFT_3319 at 620.947 kb on + strand, within EX28DRAFT_3319 at 620.947 kb on + strand, within EX28DRAFT_3319 at 620.947 kb on + strand, within EX28DRAFT_3319 at 620.947 kb on + strand, within EX28DRAFT_3319 at 620.948 kb on - strand, within EX28DRAFT_3319 at 620.968 kb on - strand, within EX28DRAFT_3319 at 621.001 kb on + strand, within EX28DRAFT_3319 at 621.001 kb on + strand, within EX28DRAFT_3319 at 621.002 kb on - strand, within EX28DRAFT_3319 at 621.080 kb on + strand, within EX28DRAFT_3319 at 621.081 kb on - strand, within EX28DRAFT_3319 at 621.085 kb on - strand, within EX28DRAFT_3319 at 621.085 kb on - strand, within EX28DRAFT_3319 at 621.085 kb on - strand, within EX28DRAFT_3319 at 621.213 kb on + strand, within EX28DRAFT_3319 at 621.213 kb on + strand, within EX28DRAFT_3319 at 621.214 kb on - strand, within EX28DRAFT_3319 at 621.538 kb on - strand, within EX28DRAFT_3319 at 621.641 kb on - strand, within EX28DRAFT_3319 at 621.655 kb on - strand, within EX28DRAFT_3319 at 621.682 kb on + strand, within EX28DRAFT_3319 at 621.682 kb on + strand, within EX28DRAFT_3319 at 621.683 kb on - strand, within EX28DRAFT_3319 at 621.683 kb on - strand, within EX28DRAFT_3319 at 621.709 kb on - strand, within EX28DRAFT_3319 at 621.726 kb on + strand, within EX28DRAFT_3319 at 621.727 kb on - strand, within EX28DRAFT_3319 at 621.730 kb on - strand, within EX28DRAFT_3319 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.823 kb on + strand, within EX28DRAFT_3319 at 621.823 kb on + strand, within EX28DRAFT_3319 at 621.877 kb on - strand, within EX28DRAFT_3319 at 621.895 kb on - strand, within EX28DRAFT_3319 at 621.997 kb on + strand, within EX28DRAFT_3319 at 621.998 kb on - strand, within EX28DRAFT_3319 at 622.042 kb on + strand, within EX28DRAFT_3319 at 622.145 kb on - strand, within EX28DRAFT_3319 at 622.216 kb on - strand at 622.484 kb on - strand at 622.525 kb on + strand at 622.572 kb on - strand at 622.572 kb on - strand at 622.586 kb on + strand at 622.586 kb on + strand at 622.605 kb on - strand at 622.607 kb on - strand at 622.607 kb on - strand at 622.615 kb on - strand at 622.669 kb on + strand at 622.674 kb on - strand at 622.771 kb on + strand at 622.860 kb on - strand, within EX28DRAFT_3320 at 623.094 kb on + strand at 623.095 kb on - strand at 623.096 kb on + strand at 623.097 kb on - strand at 623.097 kb on - strand at 623.193 kb on + strand at 623.231 kb on - strand at 623.323 kb on + strand at 623.333 kb on + strand at 623.334 kb on - strand at 623.390 kb on + strand at 623.403 kb on + strand at 623.430 kb on + strand at 623.431 kb on - strand at 623.451 kb on + strand at 623.452 kb on - strand at 623.452 kb on - strand at 623.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 618,474 + EX28DRAFT_3318 0.22 +0.2 618,475 - EX28DRAFT_3318 0.22 -0.4 618,495 - EX28DRAFT_3318 0.24 +0.5 618,515 + EX28DRAFT_3318 0.26 -0.2 618,516 - EX28DRAFT_3318 0.26 -0.3 618,527 + EX28DRAFT_3318 0.27 +0.1 618,624 - EX28DRAFT_3318 0.35 -1.6 618,624 - EX28DRAFT_3318 0.35 -0.3 618,641 + EX28DRAFT_3318 0.37 +0.4 618,641 + EX28DRAFT_3318 0.37 -0.7 618,718 + EX28DRAFT_3318 0.44 -0.2 618,719 - EX28DRAFT_3318 0.44 -0.9 618,719 - EX28DRAFT_3318 0.44 +0.9 618,719 - EX28DRAFT_3318 0.44 +0.7 618,852 - EX28DRAFT_3318 0.55 +0.6 619,187 - EX28DRAFT_3318 0.85 -0.0 619,413 - +0.3 619,549 - +0.1 619,600 + -0.5 619,600 + +0.6 619,600 + -2.9 619,600 + -0.0 619,601 - -2.4 619,601 - -0.2 619,601 - -0.3 619,601 - -0.7 619,601 - +0.1 619,601 - -0.4 619,601 - -2.3 619,601 - +0.3 619,601 - -0.4 619,601 - -0.2 619,601 - -0.3 619,601 - +0.7 619,601 - -0.7 619,601 - +0.3 619,601 - +0.2 619,601 - +0.3 619,602 + -0.3 619,602 + +0.5 619,602 + -0.3 619,602 + +0.2 619,602 + +0.2 619,602 + -0.4 619,602 + +0.6 619,602 + +0.3 619,602 + +1.2 619,602 + -0.6 619,603 - -0.2 619,603 - -0.2 619,603 - +0.0 619,603 - -0.4 619,603 - +1.0 619,841 - EX28DRAFT_3319 0.15 -0.1 619,841 - EX28DRAFT_3319 0.15 -0.8 620,245 - EX28DRAFT_3319 0.28 +0.2 620,289 + EX28DRAFT_3319 0.29 -0.7 620,290 - EX28DRAFT_3319 0.29 +0.2 620,339 + EX28DRAFT_3319 0.31 -1.2 620,340 - EX28DRAFT_3319 0.31 -2.9 620,344 + EX28DRAFT_3319 0.31 +0.3 620,345 - EX28DRAFT_3319 0.31 -1.2 620,437 + EX28DRAFT_3319 0.34 +0.1 620,437 + EX28DRAFT_3319 0.34 -0.1 620,544 + EX28DRAFT_3319 0.38 +0.4 620,544 + EX28DRAFT_3319 0.38 -0.1 620,545 - EX28DRAFT_3319 0.38 -0.5 620,545 - EX28DRAFT_3319 0.38 -0.0 620,577 - EX28DRAFT_3319 0.39 -2.6 620,892 + EX28DRAFT_3319 0.49 -0.1 620,917 - EX28DRAFT_3319 0.50 +1.3 620,947 + EX28DRAFT_3319 0.51 +0.1 620,947 + EX28DRAFT_3319 0.51 +0.1 620,947 + EX28DRAFT_3319 0.51 +0.2 620,947 + EX28DRAFT_3319 0.51 -0.1 620,948 - EX28DRAFT_3319 0.51 -0.2 620,968 - EX28DRAFT_3319 0.51 -3.1 621,001 + EX28DRAFT_3319 0.52 +0.5 621,001 + EX28DRAFT_3319 0.52 -0.1 621,002 - EX28DRAFT_3319 0.52 -0.6 621,080 + EX28DRAFT_3319 0.55 -0.3 621,081 - EX28DRAFT_3319 0.55 +0.8 621,085 - EX28DRAFT_3319 0.55 -0.6 621,085 - EX28DRAFT_3319 0.55 -0.8 621,085 - EX28DRAFT_3319 0.55 -0.4 621,213 + EX28DRAFT_3319 0.59 +0.6 621,213 + EX28DRAFT_3319 0.59 +0.6 621,214 - EX28DRAFT_3319 0.59 -0.1 621,538 - EX28DRAFT_3319 0.70 -0.3 621,641 - EX28DRAFT_3319 0.73 +0.5 621,655 - EX28DRAFT_3319 0.73 +0.3 621,682 + EX28DRAFT_3319 0.74 +1.4 621,682 + EX28DRAFT_3319 0.74 -0.6 621,683 - EX28DRAFT_3319 0.74 +0.2 621,683 - EX28DRAFT_3319 0.74 +0.1 621,709 - EX28DRAFT_3319 0.75 +0.8 621,726 + EX28DRAFT_3319 0.76 +1.5 621,727 - EX28DRAFT_3319 0.76 -1.9 621,730 - EX28DRAFT_3319 0.76 -0.8 621,800 - EX28DRAFT_3319 0.78 +0.4 621,800 - EX28DRAFT_3319 0.78 -0.5 621,800 - EX28DRAFT_3319 0.78 -0.2 621,823 + EX28DRAFT_3319 0.79 +0.2 621,823 + EX28DRAFT_3319 0.79 -0.0 621,877 - EX28DRAFT_3319 0.80 -0.9 621,895 - EX28DRAFT_3319 0.81 -0.4 621,997 + EX28DRAFT_3319 0.84 +0.3 621,998 - EX28DRAFT_3319 0.84 +0.4 622,042 + EX28DRAFT_3319 0.86 -0.6 622,145 - EX28DRAFT_3319 0.89 -0.5 622,216 - -0.5 622,484 - -0.7 622,525 + -0.2 622,572 - -3.2 622,572 - -1.0 622,586 + +0.2 622,586 + -0.3 622,605 - -0.3 622,607 - +0.0 622,607 - -0.2 622,615 - +0.3 622,669 + +0.1 622,674 - +0.3 622,771 + +0.1 622,860 - EX28DRAFT_3320 0.32 -1.5 623,094 + +0.8 623,095 - +0.5 623,096 + -1.2 623,097 - +0.6 623,097 - -0.1 623,193 + +1.0 623,231 - +0.0 623,323 + -0.7 623,333 + -0.9 623,334 - +0.1 623,390 + -0.5 623,403 + +0.6 623,430 + -0.6 623,431 - +0.0 623,451 + -1.5 623,452 - +0.0 623,452 - +0.3 623,483 + -0.5
Or see this region's nucleotide sequence