Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3296 and EX28DRAFT_3297 are separated by 42 nucleotides EX28DRAFT_3297 and EX28DRAFT_3298 overlap by 11 nucleotides EX28DRAFT_3298 and EX28DRAFT_3299 are separated by 9 nucleotides
EX28DRAFT_3296: EX28DRAFT_3296 - TIGR02099 family protein, at 593,358 to 597,161
_3296
EX28DRAFT_3297: EX28DRAFT_3297 - ribonuclease, Rne/Rng family, at 597,204 to 598,673
_3297
EX28DRAFT_3298: EX28DRAFT_3298 - MAF protein, at 598,663 to 599,256
_3298
EX28DRAFT_3299: EX28DRAFT_3299 - rod shape-determining protein MreD, at 599,266 to 599,754
_3299
Position (kb) 597
598
599 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 596.373 kb on - strand, within EX28DRAFT_3296 at 596.373 kb on - strand, within EX28DRAFT_3296 at 596.636 kb on + strand, within EX28DRAFT_3296 at 596.696 kb on + strand, within EX28DRAFT_3296 at 596.696 kb on + strand, within EX28DRAFT_3296 at 596.697 kb on - strand, within EX28DRAFT_3296 at 596.829 kb on - strand at 596.984 kb on + strand at 596.990 kb on + strand at 597.001 kb on - strand at 597.001 kb on - strand at 597.075 kb on + strand at 597.076 kb on - strand at 597.076 kb on - strand at 597.076 kb on - strand at 597.132 kb on - strand at 597.138 kb on + strand at 597.139 kb on - strand at 597.196 kb on - strand at 597.205 kb on + strand at 597.206 kb on - strand at 597.206 kb on - strand at 597.206 kb on - strand at 597.236 kb on + strand at 597.238 kb on + strand at 597.346 kb on + strand at 597.346 kb on + strand at 597.347 kb on - strand at 597.371 kb on - strand, within EX28DRAFT_3297 at 597.401 kb on + strand, within EX28DRAFT_3297 at 597.474 kb on + strand, within EX28DRAFT_3297 at 597.503 kb on + strand, within EX28DRAFT_3297 at 597.624 kb on - strand, within EX28DRAFT_3297 at 597.896 kb on - strand, within EX28DRAFT_3297 at 597.928 kb on + strand, within EX28DRAFT_3297 at 598.300 kb on - strand, within EX28DRAFT_3297 at 598.305 kb on - strand, within EX28DRAFT_3297 at 598.305 kb on - strand, within EX28DRAFT_3297 at 598.457 kb on + strand, within EX28DRAFT_3297 at 598.470 kb on + strand, within EX28DRAFT_3297 at 598.501 kb on - strand, within EX28DRAFT_3297 at 598.525 kb on - strand, within EX28DRAFT_3297 at 598.554 kb on - strand at 598.563 kb on + strand at 598.622 kb on - strand at 598.647 kb on + strand at 598.673 kb on + strand at 598.674 kb on - strand at 598.722 kb on - strand at 598.846 kb on - strand, within EX28DRAFT_3298 at 598.847 kb on + strand, within EX28DRAFT_3298 at 598.848 kb on - strand, within EX28DRAFT_3298 at 598.874 kb on - strand, within EX28DRAFT_3298 at 599.046 kb on + strand, within EX28DRAFT_3298 at 599.047 kb on - strand, within EX28DRAFT_3298 at 599.127 kb on - strand, within EX28DRAFT_3298 at 599.244 kb on - strand at 599.256 kb on + strand at 599.268 kb on - strand at 599.268 kb on - strand at 599.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 596,373 - EX28DRAFT_3296 0.79 -0.7 596,373 - EX28DRAFT_3296 0.79 +0.2 596,636 + EX28DRAFT_3296 0.86 -1.1 596,696 + EX28DRAFT_3296 0.88 -0.5 596,696 + EX28DRAFT_3296 0.88 +0.6 596,697 - EX28DRAFT_3296 0.88 -0.2 596,829 - -1.2 596,984 + -0.3 596,990 + -0.2 597,001 - +0.6 597,001 - +0.7 597,075 + -0.6 597,076 - -0.7 597,076 - +0.1 597,076 - -0.7 597,132 - +0.2 597,138 + -0.4 597,139 - +0.1 597,196 - -0.6 597,205 + -0.2 597,206 - -0.6 597,206 - +0.5 597,206 - -0.1 597,236 + -1.7 597,238 + -2.7 597,346 + -2.6 597,346 + -4.6 597,347 - -2.1 597,371 - EX28DRAFT_3297 0.11 -2.1 597,401 + EX28DRAFT_3297 0.13 -1.6 597,474 + EX28DRAFT_3297 0.18 -2.9 597,503 + EX28DRAFT_3297 0.20 -3.3 597,624 - EX28DRAFT_3297 0.29 -3.6 597,896 - EX28DRAFT_3297 0.47 -1.2 597,928 + EX28DRAFT_3297 0.49 -1.3 598,300 - EX28DRAFT_3297 0.75 -3.0 598,305 - EX28DRAFT_3297 0.75 +2.3 598,305 - EX28DRAFT_3297 0.75 +0.0 598,457 + EX28DRAFT_3297 0.85 -1.1 598,470 + EX28DRAFT_3297 0.86 -2.0 598,501 - EX28DRAFT_3297 0.88 -3.8 598,525 - EX28DRAFT_3297 0.90 -1.6 598,554 - -2.6 598,563 + -1.0 598,622 - -4.3 598,647 + -5.2 598,673 + -2.5 598,674 - -1.5 598,722 - -0.6 598,846 - EX28DRAFT_3298 0.31 +0.0 598,847 + EX28DRAFT_3298 0.31 -1.3 598,848 - EX28DRAFT_3298 0.31 -1.5 598,874 - EX28DRAFT_3298 0.36 -0.1 599,046 + EX28DRAFT_3298 0.64 -2.8 599,047 - EX28DRAFT_3298 0.65 +0.5 599,127 - EX28DRAFT_3298 0.78 +0.3 599,244 - -0.7 599,256 + -2.8 599,268 - +1.2 599,268 - -0.4 599,296 - +0.1
Or see this region's nucleotide sequence