Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3292 and EX28DRAFT_3293 are separated by 7 nucleotides EX28DRAFT_3293 and EX28DRAFT_3294 are separated by 179 nucleotides EX28DRAFT_3294 and EX28DRAFT_3295 are separated by 77 nucleotides
EX28DRAFT_3292: EX28DRAFT_3292 - RND family efflux transporter, MFP subunit, at 589,501 to 590,433
_3292
EX28DRAFT_3293: EX28DRAFT_3293 - Protein of unknown function (DUF1656), at 590,441 to 590,644
_3293
EX28DRAFT_3294: EX28DRAFT_3294 - Transcriptional regulator, at 590,824 to 591,750
_3294
EX28DRAFT_3295: EX28DRAFT_3295 - Predicted Zn-dependent proteases and their inactivated homologs, at 591,828 to 593,273
_3295
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 589.847 kb on + strand, within EX28DRAFT_3292 at 589.860 kb on - strand, within EX28DRAFT_3292 at 589.923 kb on - strand, within EX28DRAFT_3292 at 590.145 kb on - strand, within EX28DRAFT_3292 at 590.147 kb on + strand, within EX28DRAFT_3292 at 590.147 kb on + strand, within EX28DRAFT_3292 at 590.263 kb on - strand, within EX28DRAFT_3292 at 590.342 kb on + strand at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.482 kb on - strand, within EX28DRAFT_3293 at 590.657 kb on - strand at 590.657 kb on - strand at 590.744 kb on + strand at 590.755 kb on - strand at 590.756 kb on + strand at 590.756 kb on + strand at 590.756 kb on + strand at 590.780 kb on - strand at 590.780 kb on - strand at 590.783 kb on + strand at 591.036 kb on + strand, within EX28DRAFT_3294 at 591.037 kb on - strand, within EX28DRAFT_3294 at 591.073 kb on + strand, within EX28DRAFT_3294 at 591.073 kb on + strand, within EX28DRAFT_3294 at 591.126 kb on + strand, within EX28DRAFT_3294 at 591.126 kb on + strand, within EX28DRAFT_3294 at 591.535 kb on + strand, within EX28DRAFT_3294 at 591.536 kb on - strand, within EX28DRAFT_3294 at 591.634 kb on + strand, within EX28DRAFT_3294 at 591.635 kb on - strand, within EX28DRAFT_3294 at 591.666 kb on - strand at 591.675 kb on + strand at 591.675 kb on + strand at 591.675 kb on + strand at 591.676 kb on - strand at 591.678 kb on + strand at 591.678 kb on + strand at 591.678 kb on + strand at 591.678 kb on + strand at 591.678 kb on + strand at 591.679 kb on - strand at 591.679 kb on - strand at 591.679 kb on - strand at 591.679 kb on - strand at 591.679 kb on - strand at 591.682 kb on + strand at 591.682 kb on + strand at 591.683 kb on - strand at 591.694 kb on + strand at 591.695 kb on - strand at 591.748 kb on + strand at 591.829 kb on + strand at 592.042 kb on + strand, within EX28DRAFT_3295 at 592.043 kb on - strand, within EX28DRAFT_3295 at 592.174 kb on + strand, within EX28DRAFT_3295 at 592.174 kb on + strand, within EX28DRAFT_3295 at 592.175 kb on - strand, within EX28DRAFT_3295 at 592.182 kb on - strand, within EX28DRAFT_3295 at 592.210 kb on + strand, within EX28DRAFT_3295 at 592.279 kb on + strand, within EX28DRAFT_3295 at 592.280 kb on - strand, within EX28DRAFT_3295
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 589,847 + EX28DRAFT_3292 0.37 +1.3 589,860 - EX28DRAFT_3292 0.38 -0.0 589,923 - EX28DRAFT_3292 0.45 -0.1 590,145 - EX28DRAFT_3292 0.69 -0.2 590,147 + EX28DRAFT_3292 0.69 +0.2 590,147 + EX28DRAFT_3292 0.69 +0.5 590,263 - EX28DRAFT_3292 0.82 +1.8 590,342 + -0.2 590,481 + EX28DRAFT_3293 0.20 -0.8 590,481 + EX28DRAFT_3293 0.20 +0.2 590,481 + EX28DRAFT_3293 0.20 +0.6 590,481 + EX28DRAFT_3293 0.20 -0.7 590,481 + EX28DRAFT_3293 0.20 +1.3 590,481 + EX28DRAFT_3293 0.20 +0.1 590,482 - EX28DRAFT_3293 0.20 -0.5 590,657 - -0.1 590,657 - -0.2 590,744 + +0.8 590,755 - +0.1 590,756 + -0.9 590,756 + +0.4 590,756 + -0.8 590,780 - -1.1 590,780 - -0.0 590,783 + +0.8 591,036 + EX28DRAFT_3294 0.23 -0.1 591,037 - EX28DRAFT_3294 0.23 +1.3 591,073 + EX28DRAFT_3294 0.27 +0.5 591,073 + EX28DRAFT_3294 0.27 -0.4 591,126 + EX28DRAFT_3294 0.33 -0.1 591,126 + EX28DRAFT_3294 0.33 -1.1 591,535 + EX28DRAFT_3294 0.77 -0.4 591,536 - EX28DRAFT_3294 0.77 -0.9 591,634 + EX28DRAFT_3294 0.87 +0.4 591,635 - EX28DRAFT_3294 0.87 -0.8 591,666 - -0.5 591,675 + -0.7 591,675 + -0.0 591,675 + +0.0 591,676 - -0.2 591,678 + -0.2 591,678 + +0.5 591,678 + +0.1 591,678 + +0.5 591,678 + -1.2 591,679 - -0.2 591,679 - -0.3 591,679 - +0.5 591,679 - -0.1 591,679 - +1.5 591,682 + -0.7 591,682 + +0.5 591,683 - -0.2 591,694 + +0.1 591,695 - -0.6 591,748 + -0.3 591,829 + +0.8 592,042 + EX28DRAFT_3295 0.15 -1.4 592,043 - EX28DRAFT_3295 0.15 -2.8 592,174 + EX28DRAFT_3295 0.24 -0.2 592,174 + EX28DRAFT_3295 0.24 -0.2 592,175 - EX28DRAFT_3295 0.24 +0.2 592,182 - EX28DRAFT_3295 0.24 +0.9 592,210 + EX28DRAFT_3295 0.26 +0.5 592,279 + EX28DRAFT_3295 0.31 -0.6 592,280 - EX28DRAFT_3295 0.31 -0.4
Or see this region's nucleotide sequence