Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3291 and EX28DRAFT_3292 are separated by 5 nucleotides EX28DRAFT_3292 and EX28DRAFT_3293 are separated by 7 nucleotides EX28DRAFT_3293 and EX28DRAFT_3294 are separated by 179 nucleotides
EX28DRAFT_3291: EX28DRAFT_3291 - Predicted membrane protein, at 587,528 to 589,495
_3291
EX28DRAFT_3292: EX28DRAFT_3292 - RND family efflux transporter, MFP subunit, at 589,501 to 590,433
_3292
EX28DRAFT_3293: EX28DRAFT_3293 - Protein of unknown function (DUF1656), at 590,441 to 590,644
_3293
EX28DRAFT_3294: EX28DRAFT_3294 - Transcriptional regulator, at 590,824 to 591,750
_3294
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 588.573 kb on + strand, within EX28DRAFT_3291 at 588.574 kb on - strand, within EX28DRAFT_3291 at 588.574 kb on - strand, within EX28DRAFT_3291 at 588.574 kb on - strand, within EX28DRAFT_3291 at 588.574 kb on - strand, within EX28DRAFT_3291 at 588.632 kb on - strand, within EX28DRAFT_3291 at 588.640 kb on + strand, within EX28DRAFT_3291 at 588.641 kb on - strand, within EX28DRAFT_3291 at 588.781 kb on + strand, within EX28DRAFT_3291 at 588.782 kb on - strand, within EX28DRAFT_3291 at 588.823 kb on + strand, within EX28DRAFT_3291 at 588.824 kb on - strand, within EX28DRAFT_3291 at 588.824 kb on - strand, within EX28DRAFT_3291 at 588.863 kb on + strand, within EX28DRAFT_3291 at 588.884 kb on - strand, within EX28DRAFT_3291 at 588.911 kb on - strand, within EX28DRAFT_3291 at 588.933 kb on + strand, within EX28DRAFT_3291 at 589.103 kb on - strand, within EX28DRAFT_3291 at 589.118 kb on - strand, within EX28DRAFT_3291 at 589.140 kb on + strand, within EX28DRAFT_3291 at 589.240 kb on + strand, within EX28DRAFT_3291 at 589.240 kb on + strand, within EX28DRAFT_3291 at 589.240 kb on + strand, within EX28DRAFT_3291 at 589.241 kb on - strand, within EX28DRAFT_3291 at 589.241 kb on - strand, within EX28DRAFT_3291 at 589.641 kb on + strand, within EX28DRAFT_3292 at 589.641 kb on + strand, within EX28DRAFT_3292 at 589.641 kb on + strand, within EX28DRAFT_3292 at 589.642 kb on - strand, within EX28DRAFT_3292 at 589.646 kb on - strand, within EX28DRAFT_3292 at 589.731 kb on + strand, within EX28DRAFT_3292 at 589.732 kb on - strand, within EX28DRAFT_3292 at 589.847 kb on + strand, within EX28DRAFT_3292 at 589.860 kb on - strand, within EX28DRAFT_3292 at 589.923 kb on - strand, within EX28DRAFT_3292 at 590.145 kb on - strand, within EX28DRAFT_3292 at 590.147 kb on + strand, within EX28DRAFT_3292 at 590.147 kb on + strand, within EX28DRAFT_3292 at 590.263 kb on - strand, within EX28DRAFT_3292 at 590.342 kb on + strand at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.482 kb on - strand, within EX28DRAFT_3293 at 590.657 kb on - strand at 590.657 kb on - strand at 590.744 kb on + strand at 590.755 kb on - strand at 590.756 kb on + strand at 590.756 kb on + strand at 590.756 kb on + strand at 590.780 kb on - strand at 590.780 kb on - strand at 590.783 kb on + strand at 591.036 kb on + strand, within EX28DRAFT_3294 at 591.037 kb on - strand, within EX28DRAFT_3294 at 591.073 kb on + strand, within EX28DRAFT_3294 at 591.073 kb on + strand, within EX28DRAFT_3294 at 591.126 kb on + strand, within EX28DRAFT_3294 at 591.126 kb on + strand, within EX28DRAFT_3294
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 588,573 + EX28DRAFT_3291 0.53 -0.1 588,574 - EX28DRAFT_3291 0.53 +0.7 588,574 - EX28DRAFT_3291 0.53 +0.4 588,574 - EX28DRAFT_3291 0.53 -0.3 588,574 - EX28DRAFT_3291 0.53 -0.1 588,632 - EX28DRAFT_3291 0.56 -2.9 588,640 + EX28DRAFT_3291 0.57 +0.8 588,641 - EX28DRAFT_3291 0.57 -0.2 588,781 + EX28DRAFT_3291 0.64 +0.5 588,782 - EX28DRAFT_3291 0.64 -1.6 588,823 + EX28DRAFT_3291 0.66 +0.5 588,824 - EX28DRAFT_3291 0.66 -0.2 588,824 - EX28DRAFT_3291 0.66 +0.4 588,863 + EX28DRAFT_3291 0.68 +0.1 588,884 - EX28DRAFT_3291 0.69 +0.1 588,911 - EX28DRAFT_3291 0.70 -0.3 588,933 + EX28DRAFT_3291 0.71 +1.3 589,103 - EX28DRAFT_3291 0.80 -0.6 589,118 - EX28DRAFT_3291 0.81 -0.6 589,140 + EX28DRAFT_3291 0.82 -0.7 589,240 + EX28DRAFT_3291 0.87 -0.0 589,240 + EX28DRAFT_3291 0.87 -0.3 589,240 + EX28DRAFT_3291 0.87 -1.0 589,241 - EX28DRAFT_3291 0.87 -0.9 589,241 - EX28DRAFT_3291 0.87 -0.1 589,641 + EX28DRAFT_3292 0.15 +1.0 589,641 + EX28DRAFT_3292 0.15 -0.1 589,641 + EX28DRAFT_3292 0.15 +0.4 589,642 - EX28DRAFT_3292 0.15 +0.3 589,646 - EX28DRAFT_3292 0.16 -0.6 589,731 + EX28DRAFT_3292 0.25 -1.8 589,732 - EX28DRAFT_3292 0.25 +0.3 589,847 + EX28DRAFT_3292 0.37 +1.3 589,860 - EX28DRAFT_3292 0.38 -0.0 589,923 - EX28DRAFT_3292 0.45 -0.1 590,145 - EX28DRAFT_3292 0.69 -0.2 590,147 + EX28DRAFT_3292 0.69 +0.2 590,147 + EX28DRAFT_3292 0.69 +0.5 590,263 - EX28DRAFT_3292 0.82 +1.8 590,342 + -0.2 590,481 + EX28DRAFT_3293 0.20 -0.8 590,481 + EX28DRAFT_3293 0.20 +0.2 590,481 + EX28DRAFT_3293 0.20 +0.6 590,481 + EX28DRAFT_3293 0.20 -0.7 590,481 + EX28DRAFT_3293 0.20 +1.3 590,481 + EX28DRAFT_3293 0.20 +0.1 590,482 - EX28DRAFT_3293 0.20 -0.5 590,657 - -0.1 590,657 - -0.2 590,744 + +0.8 590,755 - +0.1 590,756 + -0.9 590,756 + +0.4 590,756 + -0.8 590,780 - -1.1 590,780 - -0.0 590,783 + +0.8 591,036 + EX28DRAFT_3294 0.23 -0.1 591,037 - EX28DRAFT_3294 0.23 +1.3 591,073 + EX28DRAFT_3294 0.27 +0.5 591,073 + EX28DRAFT_3294 0.27 -0.4 591,126 + EX28DRAFT_3294 0.33 -0.1 591,126 + EX28DRAFT_3294 0.33 -1.1
Or see this region's nucleotide sequence