Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3284 and EX28DRAFT_3285 are separated by 56 nucleotides EX28DRAFT_3285 and EX28DRAFT_3286 are separated by 397 nucleotides
EX28DRAFT_3284: EX28DRAFT_3284 - periplasmic serine pepetdase DegS, at 581,655 to 582,722
_3284
EX28DRAFT_3285: EX28DRAFT_3285 - malate dehydrogenase (NAD) (EC 1.1.1.37), at 582,779 to 583,717
_3285
EX28DRAFT_3286: EX28DRAFT_3286 - transcriptional regulator, ArgR family, at 584,115 to 584,585
_3286
Position (kb) 582
583
584 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 582.746 kb on - strand at 582.746 kb on - strand at 582.883 kb on + strand, within EX28DRAFT_3285 at 582.960 kb on + strand, within EX28DRAFT_3285 at 582.961 kb on - strand, within EX28DRAFT_3285 at 582.961 kb on - strand, within EX28DRAFT_3285 at 583.174 kb on + strand, within EX28DRAFT_3285 at 583.175 kb on - strand, within EX28DRAFT_3285 at 583.206 kb on - strand, within EX28DRAFT_3285 at 583.620 kb on + strand, within EX28DRAFT_3285 at 583.621 kb on - strand, within EX28DRAFT_3285 at 583.662 kb on - strand at 583.733 kb on - strand at 583.733 kb on - strand at 583.739 kb on - strand at 583.743 kb on + strand at 583.743 kb on + strand at 583.744 kb on - strand at 583.744 kb on - strand at 583.748 kb on - strand at 583.754 kb on - strand at 583.785 kb on + strand at 583.786 kb on - strand at 583.834 kb on - strand at 583.892 kb on + strand at 583.893 kb on - strand at 583.893 kb on - strand at 583.936 kb on + strand at 584.018 kb on + strand at 584.018 kb on + strand at 584.025 kb on - strand at 584.100 kb on + strand at 584.100 kb on + strand at 584.101 kb on - strand at 584.101 kb on - strand at 584.114 kb on + strand at 584.147 kb on - strand at 584.313 kb on + strand, within EX28DRAFT_3286
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 582,746 - +0.3 582,746 - -0.2 582,883 + EX28DRAFT_3285 0.11 -1.4 582,960 + EX28DRAFT_3285 0.19 -4.5 582,961 - EX28DRAFT_3285 0.19 -1.6 582,961 - EX28DRAFT_3285 0.19 -3.8 583,174 + EX28DRAFT_3285 0.42 -3.3 583,175 - EX28DRAFT_3285 0.42 -0.7 583,206 - EX28DRAFT_3285 0.45 -5.6 583,620 + EX28DRAFT_3285 0.90 -3.0 583,621 - EX28DRAFT_3285 0.90 -2.8 583,662 - -1.7 583,733 - -1.2 583,733 - -2.5 583,739 - -0.2 583,743 + -1.1 583,743 + -2.4 583,744 - -0.8 583,744 - +1.3 583,748 - +0.1 583,754 - -0.4 583,785 + -1.1 583,786 - +0.2 583,834 - -0.1 583,892 + -0.9 583,893 - -0.5 583,893 - -0.6 583,936 + -0.2 584,018 + -2.0 584,018 + +0.1 584,025 - -0.2 584,100 + +0.7 584,100 + -2.1 584,101 - -0.5 584,101 - -1.9 584,114 + -0.9 584,147 - +0.8 584,313 + EX28DRAFT_3286 0.42 -0.5
Or see this region's nucleotide sequence