Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3281 and EX28DRAFT_3282 are separated by 189 nucleotides EX28DRAFT_3282 and EX28DRAFT_3283 are separated by 171 nucleotides
EX28DRAFT_3281: EX28DRAFT_3281 - Predicted ATPase, at 578,312 to 579,436
_3281
EX28DRAFT_3282: EX28DRAFT_3282 - Uncharacterized protein conserved in bacteria, at 579,626 to 580,024
_3282
EX28DRAFT_3283: EX28DRAFT_3283 - periplasmic serine protease, Do/DeqQ family, at 580,196 to 581,563
_3283
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 578.725 kb on + strand, within EX28DRAFT_3281 at 578.725 kb on + strand, within EX28DRAFT_3281 at 578.948 kb on + strand, within EX28DRAFT_3281 at 578.949 kb on - strand, within EX28DRAFT_3281 at 579.113 kb on - strand, within EX28DRAFT_3281 at 579.113 kb on - strand, within EX28DRAFT_3281 at 579.161 kb on - strand, within EX28DRAFT_3281 at 579.163 kb on - strand, within EX28DRAFT_3281 at 579.211 kb on + strand, within EX28DRAFT_3281 at 579.211 kb on + strand, within EX28DRAFT_3281 at 579.212 kb on - strand, within EX28DRAFT_3281 at 579.212 kb on - strand, within EX28DRAFT_3281 at 579.212 kb on - strand, within EX28DRAFT_3281 at 579.212 kb on - strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.442 kb on + strand at 579.448 kb on + strand at 579.449 kb on - strand at 579.449 kb on - strand at 579.503 kb on + strand at 579.504 kb on - strand at 579.518 kb on + strand at 579.546 kb on - strand at 579.555 kb on - strand at 579.555 kb on - strand at 579.638 kb on + strand at 579.638 kb on + strand at 579.845 kb on + strand, within EX28DRAFT_3282 at 579.854 kb on - strand, within EX28DRAFT_3282 at 580.098 kb on - strand at 580.105 kb on + strand at 580.106 kb on - strand at 580.106 kb on - strand at 580.135 kb on + strand at 580.170 kb on - strand at 580.170 kb on - strand at 580.234 kb on - strand at 580.270 kb on - strand at 580.504 kb on + strand, within EX28DRAFT_3283 at 580.802 kb on - strand, within EX28DRAFT_3283 at 581.008 kb on + strand, within EX28DRAFT_3283 at 581.009 kb on - strand, within EX28DRAFT_3283
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 578,725 + EX28DRAFT_3281 0.37 +2.5 578,725 + EX28DRAFT_3281 0.37 +2.2 578,948 + EX28DRAFT_3281 0.57 +1.5 578,949 - EX28DRAFT_3281 0.57 +2.4 579,113 - EX28DRAFT_3281 0.71 +1.9 579,113 - EX28DRAFT_3281 0.71 +2.2 579,161 - EX28DRAFT_3281 0.75 +2.4 579,163 - EX28DRAFT_3281 0.76 +1.9 579,211 + EX28DRAFT_3281 0.80 +1.8 579,211 + EX28DRAFT_3281 0.80 +2.1 579,212 - EX28DRAFT_3281 0.80 +2.5 579,212 - EX28DRAFT_3281 0.80 +1.7 579,212 - EX28DRAFT_3281 0.80 +2.6 579,212 - EX28DRAFT_3281 0.80 +2.5 579,213 + EX28DRAFT_3281 0.80 +2.8 579,213 + EX28DRAFT_3281 0.80 +1.9 579,213 + EX28DRAFT_3281 0.80 +2.3 579,213 + EX28DRAFT_3281 0.80 +1.0 579,213 + EX28DRAFT_3281 0.80 +2.2 579,214 - EX28DRAFT_3281 0.80 +1.5 579,214 - EX28DRAFT_3281 0.80 +1.5 579,214 - EX28DRAFT_3281 0.80 +2.1 579,214 - EX28DRAFT_3281 0.80 +1.8 579,214 - EX28DRAFT_3281 0.80 +2.4 579,442 + +1.8 579,448 + +0.6 579,449 - -0.4 579,449 - +1.4 579,503 + -0.4 579,504 - -0.2 579,518 + -0.3 579,546 - +0.0 579,555 - -1.9 579,555 - -0.7 579,638 + -0.4 579,638 + -0.5 579,845 + EX28DRAFT_3282 0.55 -3.2 579,854 - EX28DRAFT_3282 0.57 -0.9 580,098 - -0.7 580,105 + +0.1 580,106 - -0.8 580,106 - +0.9 580,135 + -0.2 580,170 - +0.5 580,170 - +0.8 580,234 - +0.5 580,270 - -0.4 580,504 + EX28DRAFT_3283 0.23 -0.2 580,802 - EX28DRAFT_3283 0.44 +1.1 581,008 + EX28DRAFT_3283 0.59 -0.9 581,009 - EX28DRAFT_3283 0.59 +0.4
Or see this region's nucleotide sequence