Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3275 and EX28DRAFT_3276 are separated by 9 nucleotides EX28DRAFT_3276 and EX28DRAFT_3277 are separated by 29 nucleotides EX28DRAFT_3277 and EX28DRAFT_3278 overlap by 1 nucleotides
EX28DRAFT_3275: EX28DRAFT_3275 - Glutamate synthase domain 2, at 569,807 to 574,267
_3275
EX28DRAFT_3276: EX28DRAFT_3276 - glutamate synthase small subunit family protein, proteobacterial, at 574,277 to 575,695
_3276
EX28DRAFT_3277: EX28DRAFT_3277 - Stringent starvation protein B, at 575,725 to 576,228
_3277
EX28DRAFT_3278: EX28DRAFT_3278 - Glutathione S-transferase, at 576,228 to 576,866
_3278
Position (kb) 574
575
576 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 573.405 kb on - strand, within EX28DRAFT_3275 at 573.456 kb on + strand, within EX28DRAFT_3275 at 573.476 kb on + strand, within EX28DRAFT_3275 at 573.696 kb on - strand, within EX28DRAFT_3275 at 573.859 kb on + strand at 573.860 kb on - strand at 573.911 kb on + strand at 573.911 kb on + strand at 573.990 kb on - strand at 574.290 kb on + strand at 574.291 kb on - strand at 574.291 kb on - strand at 574.291 kb on - strand at 574.291 kb on - strand at 574.293 kb on - strand at 574.467 kb on - strand, within EX28DRAFT_3276 at 574.651 kb on + strand, within EX28DRAFT_3276 at 574.651 kb on + strand, within EX28DRAFT_3276 at 575.001 kb on - strand, within EX28DRAFT_3276 at 575.229 kb on - strand, within EX28DRAFT_3276 at 575.347 kb on + strand, within EX28DRAFT_3276 at 575.681 kb on + strand at 575.820 kb on + strand, within EX28DRAFT_3277 at 575.820 kb on + strand, within EX28DRAFT_3277 at 575.821 kb on - strand, within EX28DRAFT_3277 at 575.894 kb on + strand, within EX28DRAFT_3277 at 575.942 kb on + strand, within EX28DRAFT_3277 at 575.943 kb on - strand, within EX28DRAFT_3277 at 575.943 kb on - strand, within EX28DRAFT_3277 at 575.946 kb on + strand, within EX28DRAFT_3277 at 575.946 kb on + strand, within EX28DRAFT_3277 at 576.170 kb on + strand, within EX28DRAFT_3277 at 576.170 kb on + strand, within EX28DRAFT_3277 at 576.308 kb on + strand, within EX28DRAFT_3278 at 576.309 kb on - strand, within EX28DRAFT_3278 at 576.311 kb on - strand, within EX28DRAFT_3278 at 576.349 kb on - strand, within EX28DRAFT_3278
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 573,405 - EX28DRAFT_3275 0.81 -2.1 573,456 + EX28DRAFT_3275 0.82 -2.0 573,476 + EX28DRAFT_3275 0.82 -2.6 573,696 - EX28DRAFT_3275 0.87 -2.5 573,859 + -3.4 573,860 - -0.6 573,911 + -3.0 573,911 + -0.1 573,990 - -3.2 574,290 + -2.4 574,291 - -0.3 574,291 - -1.8 574,291 - -0.6 574,291 - -3.6 574,293 - -3.3 574,467 - EX28DRAFT_3276 0.13 -2.4 574,651 + EX28DRAFT_3276 0.26 -0.9 574,651 + EX28DRAFT_3276 0.26 -1.5 575,001 - EX28DRAFT_3276 0.51 -5.5 575,229 - EX28DRAFT_3276 0.67 -4.2 575,347 + EX28DRAFT_3276 0.75 -4.9 575,681 + -4.8 575,820 + EX28DRAFT_3277 0.19 +0.5 575,820 + EX28DRAFT_3277 0.19 -0.2 575,821 - EX28DRAFT_3277 0.19 -0.7 575,894 + EX28DRAFT_3277 0.34 -0.1 575,942 + EX28DRAFT_3277 0.43 +0.8 575,943 - EX28DRAFT_3277 0.43 +0.4 575,943 - EX28DRAFT_3277 0.43 +0.5 575,946 + EX28DRAFT_3277 0.44 -1.6 575,946 + EX28DRAFT_3277 0.44 +0.5 576,170 + EX28DRAFT_3277 0.88 +2.3 576,170 + EX28DRAFT_3277 0.88 +0.4 576,308 + EX28DRAFT_3278 0.13 +0.7 576,309 - EX28DRAFT_3278 0.13 +1.7 576,311 - EX28DRAFT_3278 0.13 +1.3 576,349 - EX28DRAFT_3278 0.19 +2.4
Or see this region's nucleotide sequence