Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3259

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3256 and EX28DRAFT_3257 are separated by 22 nucleotidesEX28DRAFT_3257 and EX28DRAFT_3258 are separated by 82 nucleotidesEX28DRAFT_3258 and EX28DRAFT_3259 are separated by 45 nucleotidesEX28DRAFT_3259 and EX28DRAFT_3260 overlap by 4 nucleotidesEX28DRAFT_3260 and EX28DRAFT_3261 are separated by 39 nucleotides EX28DRAFT_3256: EX28DRAFT_3256 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 548,139 to 549,572 _3256 EX28DRAFT_3257: EX28DRAFT_3257 - ribosomal subunit interface protein, at 549,595 to 549,882 _3257 EX28DRAFT_3258: EX28DRAFT_3258 - PTS IIA-like nitrogen-regulatory protein PtsN, at 549,965 to 550,456 _3258 EX28DRAFT_3259: EX28DRAFT_3259 - Predicted P-loop-containing kinase, at 550,502 to 551,356 _3259 EX28DRAFT_3260: EX28DRAFT_3260 - Phosphotransferase System HPr (HPr) Family, at 551,353 to 551,625 _3260 EX28DRAFT_3261: EX28DRAFT_3261 - monofunctional biosynthetic peptidoglycan transglycosylase, at 551,665 to 552,390 _3261 Position (kb) 550 551 552Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 549.595 kb on - strandat 549.595 kb on - strandat 549.682 kb on + strand, within EX28DRAFT_3257at 549.682 kb on + strand, within EX28DRAFT_3257at 549.706 kb on + strand, within EX28DRAFT_3257at 549.706 kb on + strand, within EX28DRAFT_3257at 549.706 kb on + strand, within EX28DRAFT_3257at 549.706 kb on + strand, within EX28DRAFT_3257at 549.706 kb on + strand, within EX28DRAFT_3257at 549.707 kb on - strand, within EX28DRAFT_3257at 549.707 kb on - strand, within EX28DRAFT_3257at 549.708 kb on + strand, within EX28DRAFT_3257at 549.708 kb on + strand, within EX28DRAFT_3257at 549.709 kb on - strand, within EX28DRAFT_3257at 549.738 kb on + strand, within EX28DRAFT_3257at 549.738 kb on + strand, within EX28DRAFT_3257at 549.805 kb on + strand, within EX28DRAFT_3257at 549.805 kb on + strand, within EX28DRAFT_3257at 549.805 kb on + strand, within EX28DRAFT_3257at 549.806 kb on - strand, within EX28DRAFT_3257at 549.806 kb on - strand, within EX28DRAFT_3257at 549.858 kb on + strandat 549.880 kb on + strandat 549.880 kb on + strandat 549.881 kb on - strandat 549.947 kb on + strandat 550.413 kb on - strandat 550.420 kb on + strandat 550.676 kb on - strand, within EX28DRAFT_3259at 551.155 kb on + strand, within EX28DRAFT_3259at 551.215 kb on + strand, within EX28DRAFT_3259at 551.216 kb on - strand, within EX28DRAFT_3259at 551.633 kb on + strandat 551.666 kb on + strandat 551.667 kb on - strandat 551.667 kb on - strandat 551.670 kb on + strandat 551.671 kb on - strandat 551.671 kb on - strandat 551.671 kb on - strandat 551.671 kb on - strandat 551.676 kb on + strandat 551.676 kb on + strandat 551.677 kb on - strandat 551.677 kb on - strandat 551.677 kb on - strandat 551.677 kb on - strandat 551.677 kb on - strandat 551.680 kb on - strandat 551.725 kb on - strandat 551.751 kb on - strand, within EX28DRAFT_3261at 551.751 kb on - strand, within EX28DRAFT_3261at 551.852 kb on + strand, within EX28DRAFT_3261at 551.881 kb on + strand, within EX28DRAFT_3261at 551.912 kb on + strand, within EX28DRAFT_3261at 552.001 kb on - strand, within EX28DRAFT_3261at 552.215 kb on + strand, within EX28DRAFT_3261at 552.295 kb on + strand, within EX28DRAFT_3261at 552.296 kb on - strand, within EX28DRAFT_3261at 552.335 kb on - strandat 552.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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549,595 - -0.6
549,595 - -3.3
549,682 + EX28DRAFT_3257 0.30 +0.3
549,682 + EX28DRAFT_3257 0.30 -0.1
549,706 + EX28DRAFT_3257 0.39 -0.4
549,706 + EX28DRAFT_3257 0.39 +0.7
549,706 + EX28DRAFT_3257 0.39 +1.7
549,706 + EX28DRAFT_3257 0.39 +0.4
549,706 + EX28DRAFT_3257 0.39 -0.1
549,707 - EX28DRAFT_3257 0.39 -0.3
549,707 - EX28DRAFT_3257 0.39 -1.2
549,708 + EX28DRAFT_3257 0.39 +0.4
549,708 + EX28DRAFT_3257 0.39 +0.8
549,709 - EX28DRAFT_3257 0.40 +0.8
549,738 + EX28DRAFT_3257 0.50 -1.2
549,738 + EX28DRAFT_3257 0.50 +0.2
549,805 + EX28DRAFT_3257 0.73 +0.9
549,805 + EX28DRAFT_3257 0.73 -0.2
549,805 + EX28DRAFT_3257 0.73 +0.3
549,806 - EX28DRAFT_3257 0.73 -1.6
549,806 - EX28DRAFT_3257 0.73 -2.8
549,858 + -0.7
549,880 + +2.5
549,880 + +0.6
549,881 - -2.9
549,947 + +1.0
550,413 - -0.1
550,420 + -2.1
550,676 - EX28DRAFT_3259 0.20 -2.1
551,155 + EX28DRAFT_3259 0.76 -2.2
551,215 + EX28DRAFT_3259 0.83 -0.4
551,216 - EX28DRAFT_3259 0.84 -0.4
551,633 + +0.2
551,666 + -2.6
551,667 - -0.3
551,667 - -1.0
551,670 + +1.1
551,671 - -0.7
551,671 - +0.2
551,671 - +0.3
551,671 - +0.3
551,676 + -0.2
551,676 + +1.0
551,677 - -0.4
551,677 - -0.1
551,677 - +0.4
551,677 - -1.0
551,677 - +1.0
551,680 - +0.1
551,725 - -0.0
551,751 - EX28DRAFT_3261 0.12 -0.5
551,751 - EX28DRAFT_3261 0.12 -0.0
551,852 + EX28DRAFT_3261 0.26 +0.7
551,881 + EX28DRAFT_3261 0.30 +0.1
551,912 + EX28DRAFT_3261 0.34 -0.8
552,001 - EX28DRAFT_3261 0.46 -0.9
552,215 + EX28DRAFT_3261 0.76 +0.6
552,295 + EX28DRAFT_3261 0.87 -0.3
552,296 - EX28DRAFT_3261 0.87 -0.3
552,335 - +0.8
552,335 - +0.1

Or see this region's nucleotide sequence