Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3249

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3247 and EX28DRAFT_3248 are separated by 4 nucleotidesEX28DRAFT_3248 and EX28DRAFT_3249 are separated by 7 nucleotidesEX28DRAFT_3249 and EX28DRAFT_3250 are separated by 227 nucleotides EX28DRAFT_3247: EX28DRAFT_3247 - mce related protein, at 541,323 to 541,871 _3247 EX28DRAFT_3248: EX28DRAFT_3248 - ABC transport permease subunit, at 541,876 to 542,658 _3248 EX28DRAFT_3249: EX28DRAFT_3249 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 542,666 to 543,478 _3249 EX28DRAFT_3250: EX28DRAFT_3250 - K+-dependent Na+/Ca+ exchanger related-protein, at 543,706 to 544,683 _3250 Position (kb) 542 543 544Strain fitness (log2 ratio) -3 -2 -1 0 1at 541.668 kb on + strand, within EX28DRAFT_3247at 541.668 kb on + strand, within EX28DRAFT_3247at 541.744 kb on + strand, within EX28DRAFT_3247at 541.744 kb on + strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.837 kb on - strandat 541.837 kb on - strandat 541.939 kb on + strandat 541.940 kb on - strandat 541.940 kb on - strandat 541.947 kb on + strandat 541.948 kb on - strandat 541.948 kb on - strandat 541.948 kb on - strandat 542.417 kb on + strand, within EX28DRAFT_3248at 542.417 kb on + strand, within EX28DRAFT_3248at 542.417 kb on + strand, within EX28DRAFT_3248at 542.418 kb on - strand, within EX28DRAFT_3248at 542.418 kb on - strand, within EX28DRAFT_3248at 542.436 kb on - strand, within EX28DRAFT_3248at 542.458 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.513 kb on + strand, within EX28DRAFT_3248at 542.513 kb on + strand, within EX28DRAFT_3248at 542.514 kb on - strand, within EX28DRAFT_3248at 542.650 kb on + strandat 542.650 kb on + strandat 542.667 kb on + strandat 542.675 kb on + strandat 542.697 kb on + strandat 542.830 kb on + strand, within EX28DRAFT_3249at 542.832 kb on + strand, within EX28DRAFT_3249at 542.855 kb on + strand, within EX28DRAFT_3249at 542.864 kb on + strand, within EX28DRAFT_3249at 542.996 kb on + strand, within EX28DRAFT_3249at 542.997 kb on - strand, within EX28DRAFT_3249at 543.235 kb on + strand, within EX28DRAFT_3249at 543.235 kb on + strand, within EX28DRAFT_3249at 543.235 kb on + strand, within EX28DRAFT_3249at 543.237 kb on + strand, within EX28DRAFT_3249at 543.238 kb on - strand, within EX28DRAFT_3249at 543.238 kb on - strand, within EX28DRAFT_3249at 543.238 kb on - strand, within EX28DRAFT_3249at 543.480 kb on + strandat 543.481 kb on - strandat 543.492 kb on - strandat 543.494 kb on + strandat 543.556 kb on - strandat 543.558 kb on + strandat 543.608 kb on + strandat 543.645 kb on + strandat 543.645 kb on + strandat 543.646 kb on - strandat 543.683 kb on + strandat 543.684 kb on - strandat 543.686 kb on - strandat 543.686 kb on - strandat 543.714 kb on - strandat 543.714 kb on - strandat 543.714 kb on - strandat 543.732 kb on - strandat 543.754 kb on + strandat 543.755 kb on - strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.787 kb on - strandat 543.787 kb on - strandat 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.945 kb on + strand, within EX28DRAFT_3250at 543.945 kb on + strand, within EX28DRAFT_3250at 543.946 kb on - strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 544.038 kb on - strand, within EX28DRAFT_3250at 544.058 kb on + strand, within EX28DRAFT_3250at 544.063 kb on + strand, within EX28DRAFT_3250at 544.081 kb on + strand, within EX28DRAFT_3250at 544.082 kb on - strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.130 kb on - strand, within EX28DRAFT_3250at 544.130 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.137 kb on + strand, within EX28DRAFT_3250at 544.313 kb on - strand, within EX28DRAFT_3250at 544.431 kb on + strand, within EX28DRAFT_3250at 544.432 kb on - strand, within EX28DRAFT_3250at 544.434 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.452 kb on - strand, within EX28DRAFT_3250at 544.452 kb on - strand, within EX28DRAFT_3250at 544.455 kb on + strand, within EX28DRAFT_3250at 544.455 kb on + strand, within EX28DRAFT_3250

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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541,668 + EX28DRAFT_3247 0.63 +0.2
541,668 + EX28DRAFT_3247 0.63 -0.5
541,744 + EX28DRAFT_3247 0.77 -0.4
541,744 + EX28DRAFT_3247 0.77 -0.3
541,745 - EX28DRAFT_3247 0.77 -0.4
541,745 - EX28DRAFT_3247 0.77 -0.2
541,745 - EX28DRAFT_3247 0.77 +0.0
541,837 - -0.2
541,837 - +0.2
541,939 + -0.1
541,940 - -0.5
541,940 - -1.0
541,947 + -0.3
541,948 - -0.6
541,948 - -0.9
541,948 - -0.9
542,417 + EX28DRAFT_3248 0.69 +0.4
542,417 + EX28DRAFT_3248 0.69 -0.5
542,417 + EX28DRAFT_3248 0.69 +0.3
542,418 - EX28DRAFT_3248 0.69 -0.9
542,418 - EX28DRAFT_3248 0.69 -3.1
542,436 - EX28DRAFT_3248 0.72 -0.2
542,458 - EX28DRAFT_3248 0.74 -1.7
542,512 - EX28DRAFT_3248 0.81 +0.0
542,512 - EX28DRAFT_3248 0.81 -2.0
542,512 - EX28DRAFT_3248 0.81 -0.8
542,513 + EX28DRAFT_3248 0.81 -0.4
542,513 + EX28DRAFT_3248 0.81 -0.5
542,514 - EX28DRAFT_3248 0.81 +0.6
542,650 + -0.2
542,650 + -0.1
542,667 + -0.1
542,675 + -1.7
542,697 + -0.4
542,830 + EX28DRAFT_3249 0.20 -0.1
542,832 + EX28DRAFT_3249 0.20 -1.4
542,855 + EX28DRAFT_3249 0.23 -0.1
542,864 + EX28DRAFT_3249 0.24 -1.5
542,996 + EX28DRAFT_3249 0.41 -1.1
542,997 - EX28DRAFT_3249 0.41 -0.4
543,235 + EX28DRAFT_3249 0.70 -0.4
543,235 + EX28DRAFT_3249 0.70 +0.0
543,235 + EX28DRAFT_3249 0.70 -0.5
543,237 + EX28DRAFT_3249 0.70 +0.3
543,238 - EX28DRAFT_3249 0.70 +0.2
543,238 - EX28DRAFT_3249 0.70 -0.3
543,238 - EX28DRAFT_3249 0.70 +0.0
543,480 + -0.2
543,481 - +0.5
543,492 - -1.2
543,494 + -1.4
543,556 - +1.3
543,558 + -0.5
543,608 + -0.7
543,645 + -0.1
543,645 + +0.9
543,646 - +0.6
543,683 + -0.7
543,684 - -0.5
543,686 - +0.5
543,686 - +0.5
543,714 - -0.0
543,714 - -1.0
543,714 - +0.8
543,732 - +0.1
543,754 + +0.5
543,755 - -0.2
543,786 + -0.6
543,786 + -0.1
543,786 + -0.7
543,786 + -0.1
543,787 - +0.8
543,787 - -0.2
543,914 + EX28DRAFT_3250 0.21 -0.0
543,914 + EX28DRAFT_3250 0.21 -0.2
543,914 + EX28DRAFT_3250 0.21 -0.4
543,914 + EX28DRAFT_3250 0.21 -1.7
543,945 + EX28DRAFT_3250 0.24 -0.1
543,945 + EX28DRAFT_3250 0.24 +0.2
543,946 - EX28DRAFT_3250 0.25 -0.2
543,947 + EX28DRAFT_3250 0.25 -0.8
543,947 + EX28DRAFT_3250 0.25 +0.1
543,947 + EX28DRAFT_3250 0.25 -1.2
544,038 - EX28DRAFT_3250 0.34 -0.5
544,058 + EX28DRAFT_3250 0.36 +0.0
544,063 + EX28DRAFT_3250 0.37 +0.5
544,081 + EX28DRAFT_3250 0.38 +0.1
544,082 - EX28DRAFT_3250 0.38 +0.6
544,129 + EX28DRAFT_3250 0.43 +0.2
544,129 + EX28DRAFT_3250 0.43 +0.7
544,129 + EX28DRAFT_3250 0.43 +0.2
544,130 - EX28DRAFT_3250 0.43 -0.1
544,130 - EX28DRAFT_3250 0.43 -0.1
544,132 - EX28DRAFT_3250 0.44 -0.0
544,132 - EX28DRAFT_3250 0.44 +0.5
544,132 - EX28DRAFT_3250 0.44 +0.0
544,137 + EX28DRAFT_3250 0.44 -0.5
544,313 - EX28DRAFT_3250 0.62 -0.9
544,431 + EX28DRAFT_3250 0.74 +0.7
544,432 - EX28DRAFT_3250 0.74 +0.4
544,434 + EX28DRAFT_3250 0.74 +0.4
544,451 + EX28DRAFT_3250 0.76 -0.1
544,451 + EX28DRAFT_3250 0.76 +0.5
544,451 + EX28DRAFT_3250 0.76 +0.3
544,451 + EX28DRAFT_3250 0.76 +0.5
544,452 - EX28DRAFT_3250 0.76 -0.2
544,452 - EX28DRAFT_3250 0.76 -0.2
544,455 + EX28DRAFT_3250 0.77 -0.2
544,455 + EX28DRAFT_3250 0.77 +0.6

Or see this region's nucleotide sequence