Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3236

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3234 and EX28DRAFT_3235 are separated by 2 nucleotidesEX28DRAFT_3235 and EX28DRAFT_3236 overlap by 4 nucleotidesEX28DRAFT_3236 and EX28DRAFT_3237 are separated by 34 nucleotides EX28DRAFT_3234: EX28DRAFT_3234 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 530,864 to 532,297 _3234 EX28DRAFT_3235: EX28DRAFT_3235 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 532,300 to 532,962 _3235 EX28DRAFT_3236: EX28DRAFT_3236 - Signal transduction histidine kinase, at 532,959 to 534,002 _3236 EX28DRAFT_3237: EX28DRAFT_3237 - Obg family GTPase CgtA, at 534,037 to 535,212 _3237 Position (kb) 532 533 534 535Strain fitness (log2 ratio) -2 -1 0 1 2at 531.990 kb on - strand, within EX28DRAFT_3234at 532.015 kb on - strand, within EX28DRAFT_3234at 532.136 kb on + strand, within EX28DRAFT_3234at 532.137 kb on - strand, within EX28DRAFT_3234at 532.194 kb on - strandat 532.194 kb on - strandat 532.240 kb on + strandat 532.272 kb on - strandat 532.272 kb on - strandat 532.274 kb on - strandat 532.284 kb on - strandat 532.291 kb on + strandat 532.291 kb on + strandat 532.296 kb on - strandat 532.307 kb on + strandat 532.307 kb on + strandat 532.307 kb on + strandat 532.308 kb on - strandat 532.313 kb on + strandat 532.314 kb on - strandat 532.560 kb on + strand, within EX28DRAFT_3235at 532.560 kb on + strand, within EX28DRAFT_3235at 532.665 kb on + strand, within EX28DRAFT_3235at 532.671 kb on + strand, within EX28DRAFT_3235at 532.677 kb on - strand, within EX28DRAFT_3235at 532.693 kb on - strand, within EX28DRAFT_3235at 532.721 kb on + strand, within EX28DRAFT_3235at 532.830 kb on + strand, within EX28DRAFT_3235at 532.831 kb on - strand, within EX28DRAFT_3235at 532.831 kb on - strand, within EX28DRAFT_3235at 532.834 kb on + strand, within EX28DRAFT_3235at 532.834 kb on + strand, within EX28DRAFT_3235at 532.834 kb on + strand, within EX28DRAFT_3235at 532.834 kb on + strand, within EX28DRAFT_3235at 532.863 kb on + strand, within EX28DRAFT_3235at 533.023 kb on + strandat 533.229 kb on - strand, within EX28DRAFT_3236at 533.269 kb on + strand, within EX28DRAFT_3236at 533.269 kb on + strand, within EX28DRAFT_3236at 533.270 kb on - strand, within EX28DRAFT_3236at 533.270 kb on - strand, within EX28DRAFT_3236at 533.282 kb on + strand, within EX28DRAFT_3236at 533.282 kb on + strand, within EX28DRAFT_3236at 533.283 kb on - strand, within EX28DRAFT_3236at 533.283 kb on - strand, within EX28DRAFT_3236at 533.283 kb on - strand, within EX28DRAFT_3236at 533.287 kb on - strand, within EX28DRAFT_3236at 533.287 kb on - strand, within EX28DRAFT_3236at 533.354 kb on + strand, within EX28DRAFT_3236at 533.355 kb on - strand, within EX28DRAFT_3236at 533.441 kb on + strand, within EX28DRAFT_3236at 533.477 kb on - strand, within EX28DRAFT_3236at 533.630 kb on + strand, within EX28DRAFT_3236at 533.630 kb on + strand, within EX28DRAFT_3236at 533.631 kb on - strand, within EX28DRAFT_3236at 533.631 kb on - strand, within EX28DRAFT_3236at 533.648 kb on + strand, within EX28DRAFT_3236at 533.750 kb on + strand, within EX28DRAFT_3236at 533.750 kb on + strand, within EX28DRAFT_3236at 533.751 kb on - strand, within EX28DRAFT_3236at 533.751 kb on - strand, within EX28DRAFT_3236at 533.840 kb on + strand, within EX28DRAFT_3236at 533.841 kb on - strand, within EX28DRAFT_3236at 534.001 kb on - strandat 534.035 kb on + strandat 534.035 kb on + strandat 534.035 kb on + strandat 534.036 kb on - strandat 534.036 kb on - strandat 534.036 kb on - strandat 534.047 kb on + strandat 534.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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531,990 - EX28DRAFT_3234 0.79 +0.5
532,015 - EX28DRAFT_3234 0.80 +0.2
532,136 + EX28DRAFT_3234 0.89 +0.6
532,137 - EX28DRAFT_3234 0.89 +0.1
532,194 - +0.4
532,194 - +0.3
532,240 + +0.2
532,272 - +0.9
532,272 - +0.3
532,274 - -0.1
532,284 - +0.3
532,291 + -0.4
532,291 + +1.2
532,296 - -2.5
532,307 + -0.9
532,307 + -0.8
532,307 + +0.8
532,308 - +0.2
532,313 + -0.6
532,314 - +0.2
532,560 + EX28DRAFT_3235 0.39 +0.4
532,560 + EX28DRAFT_3235 0.39 -0.6
532,665 + EX28DRAFT_3235 0.55 -0.2
532,671 + EX28DRAFT_3235 0.56 -0.1
532,677 - EX28DRAFT_3235 0.57 -0.1
532,693 - EX28DRAFT_3235 0.59 -0.3
532,721 + EX28DRAFT_3235 0.63 -0.4
532,830 + EX28DRAFT_3235 0.80 -0.5
532,831 - EX28DRAFT_3235 0.80 -1.5
532,831 - EX28DRAFT_3235 0.80 -0.4
532,834 + EX28DRAFT_3235 0.81 -0.7
532,834 + EX28DRAFT_3235 0.81 -0.4
532,834 + EX28DRAFT_3235 0.81 +0.1
532,834 + EX28DRAFT_3235 0.81 -0.5
532,863 + EX28DRAFT_3235 0.85 -0.3
533,023 + +0.3
533,229 - EX28DRAFT_3236 0.26 -0.2
533,269 + EX28DRAFT_3236 0.30 +1.6
533,269 + EX28DRAFT_3236 0.30 +0.2
533,270 - EX28DRAFT_3236 0.30 -0.2
533,270 - EX28DRAFT_3236 0.30 -0.6
533,282 + EX28DRAFT_3236 0.31 -0.1
533,282 + EX28DRAFT_3236 0.31 -0.4
533,283 - EX28DRAFT_3236 0.31 +0.5
533,283 - EX28DRAFT_3236 0.31 +0.0
533,283 - EX28DRAFT_3236 0.31 -0.4
533,287 - EX28DRAFT_3236 0.31 +0.4
533,287 - EX28DRAFT_3236 0.31 -1.6
533,354 + EX28DRAFT_3236 0.38 -0.3
533,355 - EX28DRAFT_3236 0.38 -0.1
533,441 + EX28DRAFT_3236 0.46 +0.4
533,477 - EX28DRAFT_3236 0.50 -0.3
533,630 + EX28DRAFT_3236 0.64 -0.3
533,630 + EX28DRAFT_3236 0.64 -0.2
533,631 - EX28DRAFT_3236 0.64 +0.6
533,631 - EX28DRAFT_3236 0.64 +0.4
533,648 + EX28DRAFT_3236 0.66 +0.1
533,750 + EX28DRAFT_3236 0.76 -0.6
533,750 + EX28DRAFT_3236 0.76 +0.2
533,751 - EX28DRAFT_3236 0.76 +0.4
533,751 - EX28DRAFT_3236 0.76 +2.5
533,840 + EX28DRAFT_3236 0.84 -2.3
533,841 - EX28DRAFT_3236 0.84 +0.3
534,001 - -0.3
534,035 + -0.4
534,035 + +0.3
534,035 + -1.1
534,036 - -0.6
534,036 - +0.4
534,036 - +0.2
534,047 + -0.8
534,048 - -0.3

Or see this region's nucleotide sequence