Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3207 and EX28DRAFT_3208 are separated by 7 nucleotides EX28DRAFT_3208 and EX28DRAFT_3209 are separated by 78 nucleotides EX28DRAFT_3209 and EX28DRAFT_3210 are separated by 62 nucleotides
EX28DRAFT_3207: EX28DRAFT_3207 - Collagenase and related proteases, at 505,454 to 506,449
_3207
EX28DRAFT_3208: EX28DRAFT_3208 - Collagenase and related proteases, at 506,457 to 507,335
_3208
EX28DRAFT_3209: EX28DRAFT_3209 - luciferase family oxidoreductase, group 1, at 507,414 to 508,421
_3209
EX28DRAFT_3210: EX28DRAFT_3210 - aromatic amino acid transport protein, at 508,484 to 509,728
_3210
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 506.430 kb on - strand at 506.438 kb on - strand at 506.463 kb on + strand at 506.463 kb on + strand at 506.464 kb on - strand at 506.464 kb on - strand at 506.484 kb on + strand at 506.484 kb on + strand at 506.774 kb on + strand, within EX28DRAFT_3208 at 506.811 kb on + strand, within EX28DRAFT_3208 at 506.961 kb on + strand, within EX28DRAFT_3208 at 506.961 kb on + strand, within EX28DRAFT_3208 at 507.051 kb on - strand, within EX28DRAFT_3208 at 507.051 kb on - strand, within EX28DRAFT_3208 at 507.055 kb on - strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.380 kb on + strand at 507.384 kb on - strand at 507.413 kb on + strand at 507.413 kb on + strand at 507.566 kb on + strand, within EX28DRAFT_3209 at 507.566 kb on + strand, within EX28DRAFT_3209 at 507.567 kb on - strand, within EX28DRAFT_3209 at 507.567 kb on - strand, within EX28DRAFT_3209 at 507.623 kb on + strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.736 kb on + strand, within EX28DRAFT_3209 at 508.083 kb on - strand, within EX28DRAFT_3209 at 508.131 kb on - strand, within EX28DRAFT_3209 at 508.233 kb on + strand, within EX28DRAFT_3209 at 508.334 kb on + strand at 508.334 kb on + strand at 508.334 kb on + strand at 508.492 kb on - strand at 508.616 kb on - strand, within EX28DRAFT_3210 at 508.625 kb on - strand, within EX28DRAFT_3210 at 508.625 kb on - strand, within EX28DRAFT_3210 at 508.661 kb on - strand, within EX28DRAFT_3210 at 508.661 kb on - strand, within EX28DRAFT_3210 at 508.692 kb on + strand, within EX28DRAFT_3210 at 508.693 kb on - strand, within EX28DRAFT_3210 at 509.010 kb on + strand, within EX28DRAFT_3210 at 509.010 kb on + strand, within EX28DRAFT_3210 at 509.010 kb on + strand, within EX28DRAFT_3210 at 509.011 kb on - strand, within EX28DRAFT_3210 at 509.079 kb on + strand, within EX28DRAFT_3210 at 509.080 kb on - strand, within EX28DRAFT_3210 at 509.080 kb on - strand, within EX28DRAFT_3210 at 509.080 kb on - strand, within EX28DRAFT_3210 at 509.258 kb on + strand, within EX28DRAFT_3210 at 509.261 kb on + strand, within EX28DRAFT_3210
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 506,430 - +1.0 506,438 - -0.6 506,463 + +0.5 506,463 + +0.6 506,464 - -0.3 506,464 - -0.9 506,484 + -0.4 506,484 + -0.5 506,774 + EX28DRAFT_3208 0.36 -0.0 506,811 + EX28DRAFT_3208 0.40 +0.2 506,961 + EX28DRAFT_3208 0.57 -0.0 506,961 + EX28DRAFT_3208 0.57 +0.4 507,051 - EX28DRAFT_3208 0.68 -0.1 507,051 - EX28DRAFT_3208 0.68 -2.2 507,055 - EX28DRAFT_3208 0.68 +1.0 507,138 + EX28DRAFT_3208 0.77 -0.3 507,138 + EX28DRAFT_3208 0.77 -0.5 507,138 + EX28DRAFT_3208 0.77 +0.5 507,138 + EX28DRAFT_3208 0.77 +0.9 507,138 + EX28DRAFT_3208 0.77 +0.4 507,138 + EX28DRAFT_3208 0.77 +0.0 507,138 + EX28DRAFT_3208 0.77 +0.6 507,138 + EX28DRAFT_3208 0.77 -0.0 507,139 - EX28DRAFT_3208 0.78 -0.6 507,139 - EX28DRAFT_3208 0.78 -1.2 507,139 - EX28DRAFT_3208 0.78 -0.5 507,380 + -1.6 507,384 - -0.9 507,413 + -0.1 507,413 + +0.3 507,566 + EX28DRAFT_3209 0.15 -0.4 507,566 + EX28DRAFT_3209 0.15 +1.0 507,567 - EX28DRAFT_3209 0.15 +0.1 507,567 - EX28DRAFT_3209 0.15 -1.9 507,623 + EX28DRAFT_3209 0.21 -0.6 507,624 - EX28DRAFT_3209 0.21 +0.1 507,624 - EX28DRAFT_3209 0.21 +0.0 507,624 - EX28DRAFT_3209 0.21 +0.0 507,736 + EX28DRAFT_3209 0.32 +0.5 508,083 - EX28DRAFT_3209 0.66 -0.5 508,131 - EX28DRAFT_3209 0.71 -0.5 508,233 + EX28DRAFT_3209 0.81 +0.0 508,334 + +0.2 508,334 + -3.2 508,334 + -1.4 508,492 - +0.2 508,616 - EX28DRAFT_3210 0.11 +0.7 508,625 - EX28DRAFT_3210 0.11 +0.3 508,625 - EX28DRAFT_3210 0.11 +1.3 508,661 - EX28DRAFT_3210 0.14 +0.2 508,661 - EX28DRAFT_3210 0.14 -0.8 508,692 + EX28DRAFT_3210 0.17 +1.0 508,693 - EX28DRAFT_3210 0.17 -0.3 509,010 + EX28DRAFT_3210 0.42 -1.0 509,010 + EX28DRAFT_3210 0.42 +0.4 509,010 + EX28DRAFT_3210 0.42 +0.2 509,011 - EX28DRAFT_3210 0.42 -0.3 509,079 + EX28DRAFT_3210 0.48 -0.3 509,080 - EX28DRAFT_3210 0.48 +0.0 509,080 - EX28DRAFT_3210 0.48 -0.2 509,080 - EX28DRAFT_3210 0.48 -0.0 509,258 + EX28DRAFT_3210 0.62 +0.1 509,261 + EX28DRAFT_3210 0.62 -0.4
Or see this region's nucleotide sequence