Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3194 and EX28DRAFT_3195 are separated by 67 nucleotides EX28DRAFT_3195 and EX28DRAFT_3196 are separated by 62 nucleotides EX28DRAFT_3196 and EX28DRAFT_3197 overlap by 43 nucleotides EX28DRAFT_3197 and EX28DRAFT_3198 are separated by 21 nucleotides EX28DRAFT_3198 and EX28DRAFT_3199 are separated by 9 nucleotides
EX28DRAFT_3194: EX28DRAFT_3194 - hypothetical protein, at 494,443 to 496,332
_3194
EX28DRAFT_3195: EX28DRAFT_3195 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 496,400 to 497,263
_3195
EX28DRAFT_3196: EX28DRAFT_3196 - LppC putative lipoprotein, at 497,326 to 499,488
_3196
EX28DRAFT_3197: EX28DRAFT_3197 - TIGR00252 family protein, at 499,446 to 499,841
_3197
EX28DRAFT_3198: EX28DRAFT_3198 - Phosphoheptose isomerase, at 499,863 to 500,453
_3198
EX28DRAFT_3199: EX28DRAFT_3199 - Predicted periplasmic or secreted lipoprotein, at 500,463 to 501,038
_3199
Position (kb) 497
498
499
500 Strain fitness (log2 ratio) -2
-1
0
1 at 496.326 kb on + strand at 496.326 kb on + strand at 496.342 kb on - strand at 496.425 kb on + strand at 496.429 kb on + strand at 496.429 kb on + strand at 496.430 kb on - strand at 496.430 kb on - strand at 496.430 kb on - strand at 496.431 kb on + strand at 496.432 kb on - strand at 496.558 kb on + strand, within EX28DRAFT_3195 at 496.558 kb on + strand, within EX28DRAFT_3195 at 496.558 kb on + strand, within EX28DRAFT_3195 at 496.721 kb on - strand, within EX28DRAFT_3195 at 496.721 kb on - strand, within EX28DRAFT_3195 at 496.796 kb on + strand, within EX28DRAFT_3195 at 496.796 kb on + strand, within EX28DRAFT_3195 at 496.942 kb on + strand, within EX28DRAFT_3195 at 496.942 kb on + strand, within EX28DRAFT_3195 at 496.943 kb on - strand, within EX28DRAFT_3195 at 497.213 kb on + strand at 497.213 kb on + strand at 497.220 kb on + strand at 497.220 kb on + strand at 497.220 kb on + strand at 497.221 kb on - strand at 497.240 kb on - strand at 497.276 kb on - strand at 497.286 kb on + strand at 497.331 kb on - strand at 497.473 kb on + strand at 497.650 kb on - strand, within EX28DRAFT_3196 at 497.668 kb on + strand, within EX28DRAFT_3196 at 497.989 kb on - strand, within EX28DRAFT_3196 at 498.309 kb on + strand, within EX28DRAFT_3196 at 498.310 kb on - strand, within EX28DRAFT_3196 at 498.536 kb on - strand, within EX28DRAFT_3196 at 498.763 kb on - strand, within EX28DRAFT_3196 at 498.921 kb on - strand, within EX28DRAFT_3196 at 499.066 kb on + strand, within EX28DRAFT_3196 at 499.284 kb on - strand at 499.284 kb on - strand at 499.284 kb on - strand at 499.442 kb on + strand at 499.442 kb on + strand at 499.443 kb on - strand at 499.457 kb on - strand at 499.486 kb on + strand at 499.508 kb on + strand, within EX28DRAFT_3197 at 499.633 kb on + strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.742 kb on + strand, within EX28DRAFT_3197 at 499.757 kb on + strand, within EX28DRAFT_3197 at 499.815 kb on - strand at 499.839 kb on + strand at 499.840 kb on - strand at 499.840 kb on - strand at 499.850 kb on + strand at 499.851 kb on - strand at 499.878 kb on - strand at 500.099 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.388 kb on - strand, within EX28DRAFT_3198 at 500.388 kb on - strand, within EX28DRAFT_3198 at 500.452 kb on - strand at 500.462 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 496,326 + +0.8 496,326 + +0.2 496,342 - -1.9 496,425 + -0.0 496,429 + +0.6 496,429 + -1.5 496,430 - +1.2 496,430 - +0.2 496,430 - +0.4 496,431 + +0.3 496,432 - +0.3 496,558 + EX28DRAFT_3195 0.18 +0.2 496,558 + EX28DRAFT_3195 0.18 -0.8 496,558 + EX28DRAFT_3195 0.18 -1.9 496,721 - EX28DRAFT_3195 0.37 -0.3 496,721 - EX28DRAFT_3195 0.37 +0.8 496,796 + EX28DRAFT_3195 0.46 +0.5 496,796 + EX28DRAFT_3195 0.46 -0.2 496,942 + EX28DRAFT_3195 0.63 +0.1 496,942 + EX28DRAFT_3195 0.63 +0.9 496,943 - EX28DRAFT_3195 0.63 -2.1 497,213 + -0.8 497,213 + -0.3 497,220 + -0.6 497,220 + +0.1 497,220 + -0.7 497,221 - -0.4 497,240 - +0.3 497,276 - +1.5 497,286 + -0.8 497,331 - +0.6 497,473 + -0.6 497,650 - EX28DRAFT_3196 0.15 +0.7 497,668 + EX28DRAFT_3196 0.16 +0.2 497,989 - EX28DRAFT_3196 0.31 -0.3 498,309 + EX28DRAFT_3196 0.45 -0.3 498,310 - EX28DRAFT_3196 0.45 +0.4 498,536 - EX28DRAFT_3196 0.56 -0.0 498,763 - EX28DRAFT_3196 0.66 -1.6 498,921 - EX28DRAFT_3196 0.74 -0.3 499,066 + EX28DRAFT_3196 0.80 -0.6 499,284 - -0.4 499,284 - -0.5 499,284 - +0.3 499,442 + -1.0 499,442 + -0.3 499,443 - -0.4 499,457 - -0.1 499,486 + +0.0 499,508 + EX28DRAFT_3197 0.16 +0.3 499,633 + EX28DRAFT_3197 0.47 -1.6 499,704 - EX28DRAFT_3197 0.65 -0.2 499,704 - EX28DRAFT_3197 0.65 -0.4 499,704 - EX28DRAFT_3197 0.65 +0.1 499,742 + EX28DRAFT_3197 0.75 -0.0 499,757 + EX28DRAFT_3197 0.79 -0.3 499,815 - +0.5 499,839 + +0.3 499,840 - +1.1 499,840 - +0.8 499,850 + +0.2 499,851 - +0.5 499,878 - +0.6 500,099 + EX28DRAFT_3198 0.40 +0.7 500,387 + EX28DRAFT_3198 0.89 +0.6 500,387 + EX28DRAFT_3198 0.89 +1.1 500,387 + EX28DRAFT_3198 0.89 +0.8 500,387 + EX28DRAFT_3198 0.89 +0.9 500,387 + EX28DRAFT_3198 0.89 +0.8 500,387 + EX28DRAFT_3198 0.89 +0.7 500,388 - EX28DRAFT_3198 0.89 -0.1 500,388 - EX28DRAFT_3198 0.89 +1.4 500,452 - +0.0 500,462 + -2.5
Or see this region's nucleotide sequence