Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3189 and EX28DRAFT_3190 are separated by 16 nucleotides EX28DRAFT_3190 and EX28DRAFT_3191 overlap by 4 nucleotides EX28DRAFT_3191 and EX28DRAFT_3192 are separated by 246 nucleotides
EX28DRAFT_3189: EX28DRAFT_3189 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID, at 489,683 to 490,561
_3189
EX28DRAFT_3190: EX28DRAFT_3190 - Phosphotransferase system, mannose/fructose-specific component IIA, at 490,578 to 491,012
_3190
EX28DRAFT_3191: EX28DRAFT_3191 - N-acetylglucosamine-6-phosphate deacetylase, at 491,009 to 492,142
_3191
EX28DRAFT_3192: EX28DRAFT_3192 - putative sugar isomerase, AgaS family, at 492,389 to 493,537
_3192
Position (kb) 491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 490.235 kb on + strand, within EX28DRAFT_3189 at 490.349 kb on + strand, within EX28DRAFT_3189 at 490.582 kb on + strand at 490.582 kb on + strand at 490.589 kb on + strand at 490.845 kb on - strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 491.074 kb on - strand at 491.074 kb on - strand at 491.159 kb on + strand, within EX28DRAFT_3191 at 491.159 kb on + strand, within EX28DRAFT_3191 at 491.160 kb on - strand, within EX28DRAFT_3191 at 491.243 kb on - strand, within EX28DRAFT_3191 at 491.390 kb on + strand, within EX28DRAFT_3191 at 491.390 kb on + strand, within EX28DRAFT_3191 at 491.467 kb on - strand, within EX28DRAFT_3191 at 491.467 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.562 kb on + strand, within EX28DRAFT_3191 at 491.648 kb on + strand, within EX28DRAFT_3191 at 491.772 kb on + strand, within EX28DRAFT_3191 at 491.773 kb on - strand, within EX28DRAFT_3191 at 491.833 kb on + strand, within EX28DRAFT_3191 at 491.850 kb on - strand, within EX28DRAFT_3191 at 491.851 kb on + strand, within EX28DRAFT_3191 at 491.852 kb on - strand, within EX28DRAFT_3191 at 491.953 kb on + strand, within EX28DRAFT_3191 at 491.954 kb on - strand, within EX28DRAFT_3191 at 491.954 kb on - strand, within EX28DRAFT_3191 at 492.096 kb on + strand at 492.097 kb on - strand at 492.388 kb on + strand at 492.675 kb on - strand, within EX28DRAFT_3192 at 492.782 kb on + strand, within EX28DRAFT_3192 at 492.796 kb on + strand, within EX28DRAFT_3192 at 492.796 kb on + strand, within EX28DRAFT_3192 at 492.821 kb on + strand, within EX28DRAFT_3192 at 493.067 kb on + strand, within EX28DRAFT_3192 at 493.067 kb on + strand, within EX28DRAFT_3192
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 490,235 + EX28DRAFT_3189 0.63 -0.2 490,349 + EX28DRAFT_3189 0.76 +0.4 490,582 + +0.4 490,582 + -0.3 490,589 + +0.3 490,845 - EX28DRAFT_3190 0.61 +0.2 490,897 + EX28DRAFT_3190 0.73 +0.0 490,897 + EX28DRAFT_3190 0.73 +1.5 490,897 + EX28DRAFT_3190 0.73 +0.0 490,897 + EX28DRAFT_3190 0.73 +1.0 491,074 - -1.0 491,074 - +0.2 491,159 + EX28DRAFT_3191 0.13 -3.5 491,159 + EX28DRAFT_3191 0.13 +2.5 491,160 - EX28DRAFT_3191 0.13 -0.5 491,243 - EX28DRAFT_3191 0.21 +0.0 491,390 + EX28DRAFT_3191 0.34 -0.0 491,390 + EX28DRAFT_3191 0.34 -0.1 491,467 - EX28DRAFT_3191 0.40 -0.5 491,467 - EX28DRAFT_3191 0.40 +0.3 491,549 - EX28DRAFT_3191 0.48 -0.4 491,549 - EX28DRAFT_3191 0.48 -1.4 491,549 - EX28DRAFT_3191 0.48 -0.8 491,562 + EX28DRAFT_3191 0.49 +0.0 491,648 + EX28DRAFT_3191 0.56 +0.5 491,772 + EX28DRAFT_3191 0.67 +0.6 491,773 - EX28DRAFT_3191 0.67 -0.4 491,833 + EX28DRAFT_3191 0.73 +0.5 491,850 - EX28DRAFT_3191 0.74 +0.2 491,851 + EX28DRAFT_3191 0.74 -1.3 491,852 - EX28DRAFT_3191 0.74 -1.1 491,953 + EX28DRAFT_3191 0.83 -0.1 491,954 - EX28DRAFT_3191 0.83 +0.0 491,954 - EX28DRAFT_3191 0.83 +0.1 492,096 + -0.4 492,097 - +0.8 492,388 + +0.3 492,675 - EX28DRAFT_3192 0.25 -0.2 492,782 + EX28DRAFT_3192 0.34 -0.2 492,796 + EX28DRAFT_3192 0.35 +0.0 492,796 + EX28DRAFT_3192 0.35 +0.1 492,821 + EX28DRAFT_3192 0.38 -0.1 493,067 + EX28DRAFT_3192 0.59 +0.2 493,067 + EX28DRAFT_3192 0.59 +0.5
Or see this region's nucleotide sequence