Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3187 and EX28DRAFT_3188 are separated by 10 nucleotides EX28DRAFT_3188 and EX28DRAFT_3189 overlap by 11 nucleotides EX28DRAFT_3189 and EX28DRAFT_3190 are separated by 16 nucleotides EX28DRAFT_3190 and EX28DRAFT_3191 overlap by 4 nucleotides
EX28DRAFT_3187: EX28DRAFT_3187 - PTS system, mannose/fructose/sorbose family, IIB component, at 488,430 to 488,903
_3187
EX28DRAFT_3188: EX28DRAFT_3188 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC, at 488,914 to 489,693
_3188
EX28DRAFT_3189: EX28DRAFT_3189 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID, at 489,683 to 490,561
_3189
EX28DRAFT_3190: EX28DRAFT_3190 - Phosphotransferase system, mannose/fructose-specific component IIA, at 490,578 to 491,012
_3190
EX28DRAFT_3191: EX28DRAFT_3191 - N-acetylglucosamine-6-phosphate deacetylase, at 491,009 to 492,142
_3191
Position (kb) 489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 488.747 kb on + strand, within EX28DRAFT_3187 at 488.747 kb on + strand, within EX28DRAFT_3187 at 488.748 kb on - strand, within EX28DRAFT_3187 at 489.080 kb on + strand, within EX28DRAFT_3188 at 489.243 kb on + strand, within EX28DRAFT_3188 at 489.309 kb on + strand, within EX28DRAFT_3188 at 489.309 kb on + strand, within EX28DRAFT_3188 at 489.334 kb on + strand, within EX28DRAFT_3188 at 489.334 kb on + strand, within EX28DRAFT_3188 at 489.335 kb on - strand, within EX28DRAFT_3188 at 489.365 kb on - strand, within EX28DRAFT_3188 at 489.365 kb on - strand, within EX28DRAFT_3188 at 489.392 kb on - strand, within EX28DRAFT_3188 at 489.526 kb on + strand, within EX28DRAFT_3188 at 489.535 kb on + strand, within EX28DRAFT_3188 at 489.633 kb on + strand at 489.634 kb on - strand at 489.634 kb on - strand at 489.691 kb on + strand at 489.692 kb on - strand at 489.692 kb on - strand at 489.692 kb on - strand at 489.805 kb on - strand, within EX28DRAFT_3189 at 489.859 kb on + strand, within EX28DRAFT_3189 at 489.860 kb on - strand, within EX28DRAFT_3189 at 490.235 kb on + strand, within EX28DRAFT_3189 at 490.349 kb on + strand, within EX28DRAFT_3189 at 490.582 kb on + strand at 490.582 kb on + strand at 490.589 kb on + strand at 490.845 kb on - strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 490.897 kb on + strand, within EX28DRAFT_3190 at 491.074 kb on - strand at 491.074 kb on - strand at 491.159 kb on + strand, within EX28DRAFT_3191 at 491.159 kb on + strand, within EX28DRAFT_3191 at 491.160 kb on - strand, within EX28DRAFT_3191 at 491.243 kb on - strand, within EX28DRAFT_3191 at 491.390 kb on + strand, within EX28DRAFT_3191 at 491.390 kb on + strand, within EX28DRAFT_3191 at 491.467 kb on - strand, within EX28DRAFT_3191 at 491.467 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191 at 491.549 kb on - strand, within EX28DRAFT_3191
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 488,747 + EX28DRAFT_3187 0.67 +0.5 488,747 + EX28DRAFT_3187 0.67 +0.6 488,748 - EX28DRAFT_3187 0.67 +1.2 489,080 + EX28DRAFT_3188 0.21 -1.0 489,243 + EX28DRAFT_3188 0.42 -0.4 489,309 + EX28DRAFT_3188 0.51 +0.6 489,309 + EX28DRAFT_3188 0.51 -0.1 489,334 + EX28DRAFT_3188 0.54 +0.4 489,334 + EX28DRAFT_3188 0.54 -1.4 489,335 - EX28DRAFT_3188 0.54 +0.6 489,365 - EX28DRAFT_3188 0.58 -0.9 489,365 - EX28DRAFT_3188 0.58 -0.2 489,392 - EX28DRAFT_3188 0.61 -0.1 489,526 + EX28DRAFT_3188 0.78 +0.3 489,535 + EX28DRAFT_3188 0.80 +0.9 489,633 + -0.9 489,634 - -0.4 489,634 - -0.5 489,691 + +0.3 489,692 - +0.0 489,692 - +0.1 489,692 - +0.1 489,805 - EX28DRAFT_3189 0.14 -1.7 489,859 + EX28DRAFT_3189 0.20 +0.0 489,860 - EX28DRAFT_3189 0.20 -2.2 490,235 + EX28DRAFT_3189 0.63 -0.2 490,349 + EX28DRAFT_3189 0.76 +0.4 490,582 + +0.4 490,582 + -0.3 490,589 + +0.3 490,845 - EX28DRAFT_3190 0.61 +0.2 490,897 + EX28DRAFT_3190 0.73 +0.0 490,897 + EX28DRAFT_3190 0.73 +1.5 490,897 + EX28DRAFT_3190 0.73 +0.0 490,897 + EX28DRAFT_3190 0.73 +1.0 491,074 - -1.0 491,074 - +0.2 491,159 + EX28DRAFT_3191 0.13 -3.5 491,159 + EX28DRAFT_3191 0.13 +2.5 491,160 - EX28DRAFT_3191 0.13 -0.5 491,243 - EX28DRAFT_3191 0.21 +0.0 491,390 + EX28DRAFT_3191 0.34 -0.0 491,390 + EX28DRAFT_3191 0.34 -0.1 491,467 - EX28DRAFT_3191 0.40 -0.5 491,467 - EX28DRAFT_3191 0.40 +0.3 491,549 - EX28DRAFT_3191 0.48 -0.4 491,549 - EX28DRAFT_3191 0.48 -1.4 491,549 - EX28DRAFT_3191 0.48 -0.8
Or see this region's nucleotide sequence