Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3187

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3186 and EX28DRAFT_3187 are separated by 20 nucleotidesEX28DRAFT_3187 and EX28DRAFT_3188 are separated by 10 nucleotidesEX28DRAFT_3188 and EX28DRAFT_3189 overlap by 11 nucleotides EX28DRAFT_3186: EX28DRAFT_3186 - D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit, at 487,114 to 488,409 _3186 EX28DRAFT_3187: EX28DRAFT_3187 - PTS system, mannose/fructose/sorbose family, IIB component, at 488,430 to 488,903 _3187 EX28DRAFT_3188: EX28DRAFT_3188 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC, at 488,914 to 489,693 _3188 EX28DRAFT_3189: EX28DRAFT_3189 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID, at 489,683 to 490,561 _3189 Position (kb) 488 489Strain fitness (log2 ratio) -2 -1 0 1at 487.621 kb on + strand, within EX28DRAFT_3186at 487.773 kb on + strand, within EX28DRAFT_3186at 487.873 kb on + strand, within EX28DRAFT_3186at 488.004 kb on - strand, within EX28DRAFT_3186at 488.101 kb on + strand, within EX28DRAFT_3186at 488.102 kb on - strand, within EX28DRAFT_3186at 488.117 kb on - strand, within EX28DRAFT_3186at 488.162 kb on - strand, within EX28DRAFT_3186at 488.182 kb on + strand, within EX28DRAFT_3186at 488.272 kb on + strand, within EX28DRAFT_3186at 488.293 kb on - strandat 488.357 kb on + strandat 488.357 kb on + strandat 488.358 kb on - strandat 488.358 kb on - strandat 488.358 kb on - strandat 488.488 kb on + strand, within EX28DRAFT_3187at 488.747 kb on + strand, within EX28DRAFT_3187at 488.747 kb on + strand, within EX28DRAFT_3187at 488.748 kb on - strand, within EX28DRAFT_3187at 489.080 kb on + strand, within EX28DRAFT_3188at 489.243 kb on + strand, within EX28DRAFT_3188at 489.309 kb on + strand, within EX28DRAFT_3188at 489.309 kb on + strand, within EX28DRAFT_3188at 489.334 kb on + strand, within EX28DRAFT_3188at 489.334 kb on + strand, within EX28DRAFT_3188at 489.335 kb on - strand, within EX28DRAFT_3188at 489.365 kb on - strand, within EX28DRAFT_3188at 489.365 kb on - strand, within EX28DRAFT_3188at 489.392 kb on - strand, within EX28DRAFT_3188at 489.526 kb on + strand, within EX28DRAFT_3188at 489.535 kb on + strand, within EX28DRAFT_3188at 489.633 kb on + strandat 489.634 kb on - strandat 489.634 kb on - strandat 489.691 kb on + strandat 489.692 kb on - strandat 489.692 kb on - strandat 489.692 kb on - strandat 489.805 kb on - strand, within EX28DRAFT_3189at 489.859 kb on + strand, within EX28DRAFT_3189at 489.860 kb on - strand, within EX28DRAFT_3189

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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487,621 + EX28DRAFT_3186 0.39 +0.5
487,773 + EX28DRAFT_3186 0.51 +0.2
487,873 + EX28DRAFT_3186 0.59 +0.6
488,004 - EX28DRAFT_3186 0.69 -0.5
488,101 + EX28DRAFT_3186 0.76 -2.1
488,102 - EX28DRAFT_3186 0.76 -0.3
488,117 - EX28DRAFT_3186 0.77 +0.3
488,162 - EX28DRAFT_3186 0.81 -1.1
488,182 + EX28DRAFT_3186 0.82 +0.3
488,272 + EX28DRAFT_3186 0.89 +0.8
488,293 - +0.0
488,357 + -0.2
488,357 + +0.6
488,358 - -0.2
488,358 - -0.7
488,358 - +0.7
488,488 + EX28DRAFT_3187 0.12 -0.1
488,747 + EX28DRAFT_3187 0.67 +0.5
488,747 + EX28DRAFT_3187 0.67 +0.6
488,748 - EX28DRAFT_3187 0.67 +1.2
489,080 + EX28DRAFT_3188 0.21 -1.0
489,243 + EX28DRAFT_3188 0.42 -0.4
489,309 + EX28DRAFT_3188 0.51 +0.6
489,309 + EX28DRAFT_3188 0.51 -0.1
489,334 + EX28DRAFT_3188 0.54 +0.4
489,334 + EX28DRAFT_3188 0.54 -1.4
489,335 - EX28DRAFT_3188 0.54 +0.6
489,365 - EX28DRAFT_3188 0.58 -0.9
489,365 - EX28DRAFT_3188 0.58 -0.2
489,392 - EX28DRAFT_3188 0.61 -0.1
489,526 + EX28DRAFT_3188 0.78 +0.3
489,535 + EX28DRAFT_3188 0.80 +0.9
489,633 + -0.9
489,634 - -0.4
489,634 - -0.5
489,691 + +0.3
489,692 - +0.0
489,692 - +0.1
489,692 - +0.1
489,805 - EX28DRAFT_3189 0.14 -1.7
489,859 + EX28DRAFT_3189 0.20 +0.0
489,860 - EX28DRAFT_3189 0.20 -2.2

Or see this region's nucleotide sequence