Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3183 and EX28DRAFT_3184 are separated by 374 nucleotides EX28DRAFT_3184 and EX28DRAFT_3185 are separated by 72 nucleotides
EX28DRAFT_3183: EX28DRAFT_3183 - 2-dehydro-3-deoxyglucarate aldolase, at 483,270 to 484,040
_3183
EX28DRAFT_3184: EX28DRAFT_3184 - galactarate dehydratase, at 484,415 to 485,986
_3184
EX28DRAFT_3185: EX28DRAFT_3185 - transcriptional regulator, DeoR family, at 486,059 to 486,862
_3185
Position (kb) 484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.525 kb on - strand, within EX28DRAFT_3183 at 483.628 kb on + strand, within EX28DRAFT_3183 at 483.711 kb on + strand, within EX28DRAFT_3183 at 483.711 kb on + strand, within EX28DRAFT_3183 at 483.712 kb on - strand, within EX28DRAFT_3183 at 483.806 kb on + strand, within EX28DRAFT_3183 at 484.034 kb on + strand at 484.068 kb on + strand at 484.071 kb on - strand at 484.071 kb on - strand at 484.088 kb on + strand at 484.159 kb on - strand at 484.160 kb on + strand at 484.202 kb on - strand at 484.275 kb on - strand at 484.348 kb on - strand at 484.351 kb on + strand at 484.406 kb on + strand at 484.462 kb on - strand at 484.558 kb on + strand at 484.559 kb on - strand at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.574 kb on - strand, within EX28DRAFT_3184 at 484.574 kb on - strand, within EX28DRAFT_3184 at 484.614 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.652 kb on - strand, within EX28DRAFT_3184 at 484.766 kb on + strand, within EX28DRAFT_3184 at 484.768 kb on + strand, within EX28DRAFT_3184 at 484.858 kb on - strand, within EX28DRAFT_3184 at 484.865 kb on + strand, within EX28DRAFT_3184 at 484.993 kb on + strand, within EX28DRAFT_3184 at 484.993 kb on + strand, within EX28DRAFT_3184 at 485.473 kb on + strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.478 kb on - strand, within EX28DRAFT_3184 at 485.707 kb on + strand, within EX28DRAFT_3184 at 485.808 kb on - strand, within EX28DRAFT_3184 at 485.814 kb on + strand, within EX28DRAFT_3184 at 485.943 kb on + strand at 485.943 kb on + strand at 485.944 kb on - strand at 485.944 kb on - strand at 485.947 kb on + strand at 485.947 kb on + strand at 485.948 kb on - strand at 486.134 kb on - strand at 486.215 kb on - strand, within EX28DRAFT_3185 at 486.508 kb on - strand, within EX28DRAFT_3185 at 486.596 kb on - strand, within EX28DRAFT_3185 at 486.947 kb on - strand at 486.947 kb on - strand at 486.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 483,525 - EX28DRAFT_3183 0.33 +0.9 483,628 + EX28DRAFT_3183 0.46 +0.8 483,711 + EX28DRAFT_3183 0.57 -0.1 483,711 + EX28DRAFT_3183 0.57 +0.3 483,712 - EX28DRAFT_3183 0.57 -0.6 483,806 + EX28DRAFT_3183 0.70 +0.0 484,034 + -0.4 484,068 + +1.0 484,071 - +0.3 484,071 - +0.8 484,088 + -0.5 484,159 - +0.1 484,160 + -1.0 484,202 - +0.2 484,275 - +1.2 484,348 - -1.2 484,351 + -0.9 484,406 + +0.5 484,462 - -0.1 484,558 + -0.3 484,559 - +0.4 484,573 + EX28DRAFT_3184 0.10 -0.1 484,573 + EX28DRAFT_3184 0.10 +0.2 484,573 + EX28DRAFT_3184 0.10 -0.6 484,573 + EX28DRAFT_3184 0.10 +1.0 484,574 - EX28DRAFT_3184 0.10 -0.5 484,574 - EX28DRAFT_3184 0.10 -0.8 484,614 + EX28DRAFT_3184 0.13 -0.4 484,651 + EX28DRAFT_3184 0.15 +0.3 484,651 + EX28DRAFT_3184 0.15 -0.1 484,651 + EX28DRAFT_3184 0.15 +0.2 484,652 - EX28DRAFT_3184 0.15 -1.0 484,766 + EX28DRAFT_3184 0.22 -1.0 484,768 + EX28DRAFT_3184 0.22 +0.7 484,858 - EX28DRAFT_3184 0.28 +0.4 484,865 + EX28DRAFT_3184 0.29 -0.6 484,993 + EX28DRAFT_3184 0.37 +0.2 484,993 + EX28DRAFT_3184 0.37 -1.8 485,473 + EX28DRAFT_3184 0.67 -0.0 485,478 - EX28DRAFT_3184 0.68 -0.6 485,478 - EX28DRAFT_3184 0.68 -0.1 485,478 - EX28DRAFT_3184 0.68 -2.0 485,707 + EX28DRAFT_3184 0.82 -0.4 485,808 - EX28DRAFT_3184 0.89 -0.8 485,814 + EX28DRAFT_3184 0.89 -0.2 485,943 + +0.5 485,943 + -0.6 485,944 - +0.1 485,944 - -0.6 485,947 + +2.3 485,947 + +0.0 485,948 - -0.2 486,134 - -0.3 486,215 - EX28DRAFT_3185 0.19 -1.3 486,508 - EX28DRAFT_3185 0.56 -2.5 486,596 - EX28DRAFT_3185 0.67 -0.3 486,947 - -0.2 486,947 - -0.2 486,951 - +0.1
Or see this region's nucleotide sequence