Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3177 and EX28DRAFT_3178 are separated by 9 nucleotides EX28DRAFT_3178 and EX28DRAFT_3179 are separated by 100 nucleotides
EX28DRAFT_3177: EX28DRAFT_3177 - serine transporter, at 477,894 to 479,225
_3177
EX28DRAFT_3178: EX28DRAFT_3178 - Threonine dehydratase, at 479,235 to 480,224
_3178
EX28DRAFT_3179: EX28DRAFT_3179 - Transcriptional regulator, at 480,325 to 481,245
_3179
Position (kb) 479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 478.277 kb on - strand, within EX28DRAFT_3177 at 478.410 kb on - strand, within EX28DRAFT_3177 at 478.410 kb on - strand, within EX28DRAFT_3177 at 478.758 kb on - strand, within EX28DRAFT_3177 at 478.856 kb on + strand, within EX28DRAFT_3177 at 478.915 kb on + strand, within EX28DRAFT_3177 at 478.915 kb on + strand, within EX28DRAFT_3177 at 478.916 kb on - strand, within EX28DRAFT_3177 at 478.946 kb on + strand, within EX28DRAFT_3177 at 479.032 kb on + strand, within EX28DRAFT_3177 at 479.172 kb on - strand at 479.225 kb on + strand at 479.225 kb on + strand at 479.226 kb on - strand at 479.226 kb on - strand at 479.312 kb on + strand at 479.313 kb on - strand at 479.326 kb on + strand at 479.327 kb on - strand at 479.327 kb on - strand at 479.612 kb on + strand, within EX28DRAFT_3178 at 479.612 kb on + strand, within EX28DRAFT_3178 at 479.612 kb on + strand, within EX28DRAFT_3178 at 479.613 kb on - strand, within EX28DRAFT_3178 at 479.706 kb on + strand, within EX28DRAFT_3178 at 479.784 kb on - strand, within EX28DRAFT_3178 at 479.888 kb on + strand, within EX28DRAFT_3178 at 479.888 kb on + strand, within EX28DRAFT_3178 at 480.028 kb on - strand, within EX28DRAFT_3178 at 480.216 kb on - strand at 480.224 kb on + strand at 480.281 kb on + strand at 480.543 kb on + strand, within EX28DRAFT_3179 at 480.545 kb on + strand, within EX28DRAFT_3179 at 480.545 kb on + strand, within EX28DRAFT_3179 at 480.546 kb on - strand, within EX28DRAFT_3179 at 480.546 kb on - strand, within EX28DRAFT_3179 at 480.609 kb on + strand, within EX28DRAFT_3179 at 480.626 kb on + strand, within EX28DRAFT_3179 at 480.627 kb on - strand, within EX28DRAFT_3179 at 480.627 kb on - strand, within EX28DRAFT_3179 at 480.854 kb on + strand, within EX28DRAFT_3179 at 480.854 kb on + strand, within EX28DRAFT_3179 at 480.855 kb on - strand, within EX28DRAFT_3179 at 480.919 kb on - strand, within EX28DRAFT_3179 at 480.919 kb on - strand, within EX28DRAFT_3179 at 481.077 kb on + strand, within EX28DRAFT_3179 at 481.104 kb on - strand, within EX28DRAFT_3179 at 481.188 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 478,277 - EX28DRAFT_3177 0.29 +1.9 478,410 - EX28DRAFT_3177 0.39 -0.5 478,410 - EX28DRAFT_3177 0.39 +0.1 478,758 - EX28DRAFT_3177 0.65 +0.7 478,856 + EX28DRAFT_3177 0.72 -0.0 478,915 + EX28DRAFT_3177 0.77 -0.8 478,915 + EX28DRAFT_3177 0.77 -0.6 478,916 - EX28DRAFT_3177 0.77 -1.6 478,946 + EX28DRAFT_3177 0.79 -3.6 479,032 + EX28DRAFT_3177 0.85 +1.2 479,172 - +0.8 479,225 + +0.4 479,225 + -0.0 479,226 - +0.9 479,226 - +0.9 479,312 + -0.3 479,313 - -0.8 479,326 + +1.1 479,327 - +0.8 479,327 - +0.1 479,612 + EX28DRAFT_3178 0.38 +0.1 479,612 + EX28DRAFT_3178 0.38 +0.1 479,612 + EX28DRAFT_3178 0.38 -2.1 479,613 - EX28DRAFT_3178 0.38 -0.7 479,706 + EX28DRAFT_3178 0.48 -0.1 479,784 - EX28DRAFT_3178 0.55 +0.0 479,888 + EX28DRAFT_3178 0.66 +0.4 479,888 + EX28DRAFT_3178 0.66 -0.2 480,028 - EX28DRAFT_3178 0.80 +0.4 480,216 - -0.9 480,224 + -0.9 480,281 + -0.6 480,543 + EX28DRAFT_3179 0.24 -0.4 480,545 + EX28DRAFT_3179 0.24 -1.2 480,545 + EX28DRAFT_3179 0.24 +0.6 480,546 - EX28DRAFT_3179 0.24 -0.8 480,546 - EX28DRAFT_3179 0.24 +1.7 480,609 + EX28DRAFT_3179 0.31 +0.5 480,626 + EX28DRAFT_3179 0.33 -0.4 480,627 - EX28DRAFT_3179 0.33 -0.3 480,627 - EX28DRAFT_3179 0.33 -0.3 480,854 + EX28DRAFT_3179 0.57 +1.5 480,854 + EX28DRAFT_3179 0.57 +0.1 480,855 - EX28DRAFT_3179 0.58 -0.2 480,919 - EX28DRAFT_3179 0.64 -0.6 480,919 - EX28DRAFT_3179 0.64 +0.6 481,077 + EX28DRAFT_3179 0.82 -0.0 481,104 - EX28DRAFT_3179 0.85 +0.4 481,188 + +0.8
Or see this region's nucleotide sequence