Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3164 and EX28DRAFT_3165 are separated by 142 nucleotides EX28DRAFT_3165 and EX28DRAFT_3166 are separated by 31 nucleotides EX28DRAFT_3166 and EX28DRAFT_3167 are separated by 1 nucleotides EX28DRAFT_3167 and EX28DRAFT_3168 are separated by 2 nucleotides EX28DRAFT_3168 and EX28DRAFT_3169 are separated by 252 nucleotides
EX28DRAFT_3164: EX28DRAFT_3164 - SecD export protein N-terminal TM region, at 467,838 to 468,221
_3164
EX28DRAFT_3165: EX28DRAFT_3165 - Protein of unknown function (DUF1090), at 468,364 to 468,732
_3165
EX28DRAFT_3166: EX28DRAFT_3166 - Uncharacterized conserved protein, at 468,764 to 469,069
_3166
EX28DRAFT_3167: EX28DRAFT_3167 - Predicted membrane protein, at 469,071 to 469,463
_3167
EX28DRAFT_3168: EX28DRAFT_3168 - YqjK-like protein, at 469,466 to 469,762
_3168
EX28DRAFT_3169: EX28DRAFT_3169 - Predicted membrane protein, at 470,015 to 470,407
_3169
Position (kb) 469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 468.138 kb on + strand, within EX28DRAFT_3164 at 468.139 kb on - strand, within EX28DRAFT_3164 at 468.140 kb on + strand, within EX28DRAFT_3164 at 468.140 kb on + strand, within EX28DRAFT_3164 at 468.141 kb on - strand, within EX28DRAFT_3164 at 468.141 kb on - strand, within EX28DRAFT_3164 at 468.220 kb on - strand at 468.269 kb on + strand at 468.269 kb on + strand at 468.270 kb on - strand at 468.273 kb on + strand at 468.273 kb on + strand at 468.274 kb on - strand at 468.274 kb on - strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.277 kb on - strand at 468.282 kb on + strand at 468.282 kb on + strand at 468.282 kb on + strand at 468.282 kb on + strand at 468.283 kb on - strand at 468.283 kb on - strand at 468.404 kb on + strand, within EX28DRAFT_3165 at 468.472 kb on + strand, within EX28DRAFT_3165 at 468.486 kb on + strand, within EX28DRAFT_3165 at 468.513 kb on + strand, within EX28DRAFT_3165 at 468.986 kb on + strand, within EX28DRAFT_3166 at 469.014 kb on + strand, within EX28DRAFT_3166 at 469.103 kb on + strand at 469.104 kb on - strand at 469.131 kb on - strand, within EX28DRAFT_3167 at 469.131 kb on - strand, within EX28DRAFT_3167 at 469.502 kb on + strand, within EX28DRAFT_3168 at 469.502 kb on + strand, within EX28DRAFT_3168 at 469.503 kb on - strand, within EX28DRAFT_3168 at 469.597 kb on + strand, within EX28DRAFT_3168 at 469.672 kb on + strand, within EX28DRAFT_3168 at 470.123 kb on + strand, within EX28DRAFT_3169 at 470.123 kb on + strand, within EX28DRAFT_3169 at 470.123 kb on + strand, within EX28DRAFT_3169 at 470.124 kb on - strand, within EX28DRAFT_3169 at 470.124 kb on - strand, within EX28DRAFT_3169 at 470.124 kb on - strand, within EX28DRAFT_3169 at 470.124 kb on - strand, within EX28DRAFT_3169 at 470.124 kb on - strand, within EX28DRAFT_3169 at 470.125 kb on + strand, within EX28DRAFT_3169 at 470.125 kb on + strand, within EX28DRAFT_3169 at 470.125 kb on + strand, within EX28DRAFT_3169 at 470.396 kb on - strand at 470.396 kb on - strand at 470.405 kb on + strand at 470.406 kb on - strand at 470.414 kb on + strand at 470.415 kb on - strand at 470.442 kb on + strand at 470.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 468,138 + EX28DRAFT_3164 0.78 +0.8 468,139 - EX28DRAFT_3164 0.78 +0.8 468,140 + EX28DRAFT_3164 0.79 -0.1 468,140 + EX28DRAFT_3164 0.79 -0.2 468,141 - EX28DRAFT_3164 0.79 -1.1 468,141 - EX28DRAFT_3164 0.79 -0.1 468,220 - +0.7 468,269 + +0.5 468,269 + -0.2 468,270 - -0.0 468,273 + +0.3 468,273 + -0.7 468,274 - +0.6 468,274 - +0.3 468,276 + -0.0 468,276 + -0.1 468,277 - +0.4 468,282 + +0.4 468,282 + +0.1 468,282 + -0.1 468,282 + +0.6 468,283 - -0.2 468,283 - -0.3 468,404 + EX28DRAFT_3165 0.11 +0.2 468,472 + EX28DRAFT_3165 0.29 -0.6 468,486 + EX28DRAFT_3165 0.33 -2.3 468,513 + EX28DRAFT_3165 0.40 +0.5 468,986 + EX28DRAFT_3166 0.73 +1.4 469,014 + EX28DRAFT_3166 0.82 +0.0 469,103 + +0.3 469,104 - +0.1 469,131 - EX28DRAFT_3167 0.15 +0.1 469,131 - EX28DRAFT_3167 0.15 +0.4 469,502 + EX28DRAFT_3168 0.12 +0.5 469,502 + EX28DRAFT_3168 0.12 -0.2 469,503 - EX28DRAFT_3168 0.12 -0.4 469,597 + EX28DRAFT_3168 0.44 -0.0 469,672 + EX28DRAFT_3168 0.69 +0.4 470,123 + EX28DRAFT_3169 0.27 +0.2 470,123 + EX28DRAFT_3169 0.27 -0.3 470,123 + EX28DRAFT_3169 0.27 +0.4 470,124 - EX28DRAFT_3169 0.28 -0.9 470,124 - EX28DRAFT_3169 0.28 -0.1 470,124 - EX28DRAFT_3169 0.28 +0.7 470,124 - EX28DRAFT_3169 0.28 +0.7 470,124 - EX28DRAFT_3169 0.28 +0.4 470,125 + EX28DRAFT_3169 0.28 +0.2 470,125 + EX28DRAFT_3169 0.28 -0.5 470,125 + EX28DRAFT_3169 0.28 -0.2 470,396 - -0.3 470,396 - -0.3 470,405 + +0.8 470,406 - -0.1 470,414 + +0.6 470,415 - -0.5 470,442 + -3.3 470,443 - +0.2
Or see this region's nucleotide sequence