Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3163 and EX28DRAFT_3164 are separated by 2 nucleotides EX28DRAFT_3164 and EX28DRAFT_3165 are separated by 142 nucleotides EX28DRAFT_3165 and EX28DRAFT_3166 are separated by 31 nucleotides EX28DRAFT_3166 and EX28DRAFT_3167 are separated by 1 nucleotides EX28DRAFT_3167 and EX28DRAFT_3168 are separated by 2 nucleotides
EX28DRAFT_3163: EX28DRAFT_3163 - Uncharacterized membrane-associated protein, at 467,173 to 467,835
_3163
EX28DRAFT_3164: EX28DRAFT_3164 - SecD export protein N-terminal TM region, at 467,838 to 468,221
_3164
EX28DRAFT_3165: EX28DRAFT_3165 - Protein of unknown function (DUF1090), at 468,364 to 468,732
_3165
EX28DRAFT_3166: EX28DRAFT_3166 - Uncharacterized conserved protein, at 468,764 to 469,069
_3166
EX28DRAFT_3167: EX28DRAFT_3167 - Predicted membrane protein, at 469,071 to 469,463
_3167
EX28DRAFT_3168: EX28DRAFT_3168 - YqjK-like protein, at 469,466 to 469,762
_3168
Position (kb) 468
469 Strain fitness (log2 ratio) -2
-1
0
1 at 467.390 kb on + strand, within EX28DRAFT_3163 at 467.391 kb on - strand, within EX28DRAFT_3163 at 467.391 kb on - strand, within EX28DRAFT_3163 at 467.431 kb on + strand, within EX28DRAFT_3163 at 467.431 kb on + strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.661 kb on - strand, within EX28DRAFT_3163 at 467.661 kb on - strand, within EX28DRAFT_3163 at 467.661 kb on - strand, within EX28DRAFT_3163 at 467.690 kb on - strand, within EX28DRAFT_3163 at 467.722 kb on + strand, within EX28DRAFT_3163 at 467.722 kb on + strand, within EX28DRAFT_3163 at 467.723 kb on - strand, within EX28DRAFT_3163 at 467.843 kb on + strand at 467.886 kb on - strand, within EX28DRAFT_3164 at 467.984 kb on - strand, within EX28DRAFT_3164 at 467.984 kb on - strand, within EX28DRAFT_3164 at 468.065 kb on - strand, within EX28DRAFT_3164 at 468.138 kb on + strand, within EX28DRAFT_3164 at 468.139 kb on - strand, within EX28DRAFT_3164 at 468.140 kb on + strand, within EX28DRAFT_3164 at 468.140 kb on + strand, within EX28DRAFT_3164 at 468.141 kb on - strand, within EX28DRAFT_3164 at 468.141 kb on - strand, within EX28DRAFT_3164 at 468.220 kb on - strand at 468.269 kb on + strand at 468.269 kb on + strand at 468.270 kb on - strand at 468.273 kb on + strand at 468.273 kb on + strand at 468.274 kb on - strand at 468.274 kb on - strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.277 kb on - strand at 468.282 kb on + strand at 468.282 kb on + strand at 468.282 kb on + strand at 468.282 kb on + strand at 468.283 kb on - strand at 468.283 kb on - strand at 468.404 kb on + strand, within EX28DRAFT_3165 at 468.472 kb on + strand, within EX28DRAFT_3165 at 468.486 kb on + strand, within EX28DRAFT_3165 at 468.513 kb on + strand, within EX28DRAFT_3165 at 468.986 kb on + strand, within EX28DRAFT_3166 at 469.014 kb on + strand, within EX28DRAFT_3166 at 469.103 kb on + strand at 469.104 kb on - strand at 469.131 kb on - strand, within EX28DRAFT_3167 at 469.131 kb on - strand, within EX28DRAFT_3167 at 469.502 kb on + strand, within EX28DRAFT_3168 at 469.502 kb on + strand, within EX28DRAFT_3168 at 469.503 kb on - strand, within EX28DRAFT_3168 at 469.597 kb on + strand, within EX28DRAFT_3168 at 469.672 kb on + strand, within EX28DRAFT_3168
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 467,390 + EX28DRAFT_3163 0.33 -0.9 467,391 - EX28DRAFT_3163 0.33 -0.6 467,391 - EX28DRAFT_3163 0.33 -0.8 467,431 + EX28DRAFT_3163 0.39 +1.0 467,431 + EX28DRAFT_3163 0.39 +1.1 467,432 - EX28DRAFT_3163 0.39 -0.7 467,432 - EX28DRAFT_3163 0.39 +0.5 467,432 - EX28DRAFT_3163 0.39 -1.1 467,432 - EX28DRAFT_3163 0.39 +0.5 467,432 - EX28DRAFT_3163 0.39 +1.4 467,432 - EX28DRAFT_3163 0.39 -0.7 467,661 - EX28DRAFT_3163 0.74 +0.1 467,661 - EX28DRAFT_3163 0.74 +0.1 467,661 - EX28DRAFT_3163 0.74 +0.4 467,690 - EX28DRAFT_3163 0.78 +0.3 467,722 + EX28DRAFT_3163 0.83 +0.5 467,722 + EX28DRAFT_3163 0.83 +1.4 467,723 - EX28DRAFT_3163 0.83 +0.3 467,843 + -1.0 467,886 - EX28DRAFT_3164 0.12 -0.2 467,984 - EX28DRAFT_3164 0.38 -0.0 467,984 - EX28DRAFT_3164 0.38 -0.0 468,065 - EX28DRAFT_3164 0.59 -0.6 468,138 + EX28DRAFT_3164 0.78 +0.8 468,139 - EX28DRAFT_3164 0.78 +0.8 468,140 + EX28DRAFT_3164 0.79 -0.1 468,140 + EX28DRAFT_3164 0.79 -0.2 468,141 - EX28DRAFT_3164 0.79 -1.1 468,141 - EX28DRAFT_3164 0.79 -0.1 468,220 - +0.7 468,269 + +0.5 468,269 + -0.2 468,270 - -0.0 468,273 + +0.3 468,273 + -0.7 468,274 - +0.6 468,274 - +0.3 468,276 + -0.0 468,276 + -0.1 468,277 - +0.4 468,282 + +0.4 468,282 + +0.1 468,282 + -0.1 468,282 + +0.6 468,283 - -0.2 468,283 - -0.3 468,404 + EX28DRAFT_3165 0.11 +0.2 468,472 + EX28DRAFT_3165 0.29 -0.6 468,486 + EX28DRAFT_3165 0.33 -2.3 468,513 + EX28DRAFT_3165 0.40 +0.5 468,986 + EX28DRAFT_3166 0.73 +1.4 469,014 + EX28DRAFT_3166 0.82 +0.0 469,103 + +0.3 469,104 - +0.1 469,131 - EX28DRAFT_3167 0.15 +0.1 469,131 - EX28DRAFT_3167 0.15 +0.4 469,502 + EX28DRAFT_3168 0.12 +0.5 469,502 + EX28DRAFT_3168 0.12 -0.2 469,503 - EX28DRAFT_3168 0.12 -0.4 469,597 + EX28DRAFT_3168 0.44 -0.0 469,672 + EX28DRAFT_3168 0.69 +0.4
Or see this region's nucleotide sequence