Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3128 and EX28DRAFT_3129 are separated by 1 nucleotides EX28DRAFT_3129 and EX28DRAFT_3130 overlap by 1 nucleotides EX28DRAFT_3130 and EX28DRAFT_3131 are separated by 68 nucleotides EX28DRAFT_3131 and EX28DRAFT_3132 are separated by 227 nucleotides
EX28DRAFT_3128: EX28DRAFT_3128 - Bacteriophage replication gene A protein (GPA), at 429,552 to 431,741
_3128
EX28DRAFT_3129: EX28DRAFT_3129 - transcriptional regulator, TraR/DksA family, at 431,743 to 431,964
_3129
EX28DRAFT_3130: EX28DRAFT_3130 - Protein of unknown function (DUF2732), at 431,964 to 432,191
_3130
EX28DRAFT_3131: EX28DRAFT_3131 - hypothetical protein, at 432,260 to 432,598
_3131
EX28DRAFT_3132: EX28DRAFT_3132 - Bacteriophage CI repressor helix-turn-helix domain, at 432,826 to 433,401
_3132
Position (kb) 431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.785 kb on - strand, within EX28DRAFT_3128 at 430.788 kb on + strand, within EX28DRAFT_3128 at 430.802 kb on - strand, within EX28DRAFT_3128 at 431.224 kb on + strand, within EX28DRAFT_3128 at 431.225 kb on - strand, within EX28DRAFT_3128 at 431.233 kb on + strand, within EX28DRAFT_3128 at 431.246 kb on - strand, within EX28DRAFT_3128 at 431.268 kb on - strand, within EX28DRAFT_3128 at 431.356 kb on + strand, within EX28DRAFT_3128 at 431.392 kb on + strand, within EX28DRAFT_3128 at 431.392 kb on + strand, within EX28DRAFT_3128 at 431.393 kb on - strand, within EX28DRAFT_3128 at 431.393 kb on - strand, within EX28DRAFT_3128 at 431.467 kb on + strand, within EX28DRAFT_3128 at 431.468 kb on - strand, within EX28DRAFT_3128 at 431.468 kb on - strand, within EX28DRAFT_3128 at 431.683 kb on + strand at 431.684 kb on - strand at 431.736 kb on - strand at 431.744 kb on + strand at 431.745 kb on - strand at 431.745 kb on - strand at 431.763 kb on + strand at 431.771 kb on - strand, within EX28DRAFT_3129 at 431.909 kb on + strand, within EX28DRAFT_3129 at 431.909 kb on + strand, within EX28DRAFT_3129 at 431.909 kb on + strand, within EX28DRAFT_3129 at 432.053 kb on - strand, within EX28DRAFT_3130 at 432.053 kb on - strand, within EX28DRAFT_3130 at 432.053 kb on - strand, within EX28DRAFT_3130 at 432.057 kb on - strand, within EX28DRAFT_3130 at 432.205 kb on + strand at 432.244 kb on + strand at 432.261 kb on + strand at 432.261 kb on + strand at 432.261 kb on + strand at 432.599 kb on - strand at 432.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 430,785 - EX28DRAFT_3128 0.56 -1.1 430,788 + EX28DRAFT_3128 0.56 +0.3 430,802 - EX28DRAFT_3128 0.57 -0.7 431,224 + EX28DRAFT_3128 0.76 -0.4 431,225 - EX28DRAFT_3128 0.76 -0.0 431,233 + EX28DRAFT_3128 0.77 +0.4 431,246 - EX28DRAFT_3128 0.77 -1.5 431,268 - EX28DRAFT_3128 0.78 +0.4 431,356 + EX28DRAFT_3128 0.82 -0.7 431,392 + EX28DRAFT_3128 0.84 -0.1 431,392 + EX28DRAFT_3128 0.84 +0.4 431,393 - EX28DRAFT_3128 0.84 -0.8 431,393 - EX28DRAFT_3128 0.84 +1.1 431,467 + EX28DRAFT_3128 0.87 -1.5 431,468 - EX28DRAFT_3128 0.87 -0.9 431,468 - EX28DRAFT_3128 0.87 -1.1 431,683 + +0.8 431,684 - -0.6 431,736 - -0.8 431,744 + -0.1 431,745 - -0.3 431,745 - +0.0 431,763 + -3.0 431,771 - EX28DRAFT_3129 0.13 -2.0 431,909 + EX28DRAFT_3129 0.75 -0.3 431,909 + EX28DRAFT_3129 0.75 +0.1 431,909 + EX28DRAFT_3129 0.75 -0.9 432,053 - EX28DRAFT_3130 0.39 +0.7 432,053 - EX28DRAFT_3130 0.39 -1.8 432,053 - EX28DRAFT_3130 0.39 -0.1 432,057 - EX28DRAFT_3130 0.41 +0.1 432,205 + +1.1 432,244 + -1.4 432,261 + -0.1 432,261 + -0.9 432,261 + -0.2 432,599 - -0.8 432,599 - -0.0
Or see this region's nucleotide sequence