Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3115

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3112 and EX28DRAFT_3113 are separated by 50 nucleotidesEX28DRAFT_3113 and EX28DRAFT_3114 are separated by 110 nucleotidesEX28DRAFT_3114 and EX28DRAFT_3115 overlap by 17 nucleotidesEX28DRAFT_3115 and EX28DRAFT_3116 overlap by 1 nucleotides EX28DRAFT_3112: EX28DRAFT_3112 - Site-specific recombinases, DNA invertase Pin homologs, at 421,220 to 421,813 _3112 EX28DRAFT_3113: EX28DRAFT_3113 - hypothetical protein, at 421,864 to 422,145 _3113 EX28DRAFT_3114: EX28DRAFT_3114 - Caudovirales tail fibre assembly protein, at 422,256 to 422,651 _3114 EX28DRAFT_3115: EX28DRAFT_3115 - Caudovirales tail fibre assembly protein, at 422,635 to 423,231 _3115 EX28DRAFT_3116: EX28DRAFT_3116 - Phage-related tail fibre protein, at 423,231 to 424,316 _3116 Position (kb) 422 423 424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 421.635 kb on - strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.645 kb on + strand, within EX28DRAFT_3112at 421.646 kb on - strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.657 kb on + strand, within EX28DRAFT_3112at 421.658 kb on - strand, within EX28DRAFT_3112at 421.678 kb on + strand, within EX28DRAFT_3112at 421.679 kb on - strand, within EX28DRAFT_3112at 421.703 kb on - strand, within EX28DRAFT_3112at 421.714 kb on + strand, within EX28DRAFT_3112at 421.715 kb on - strand, within EX28DRAFT_3112at 421.764 kb on - strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.796 kb on + strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.797 kb on - strandat 421.801 kb on - strandat 421.801 kb on - strandat 421.808 kb on - strandat 421.817 kb on - strandat 421.851 kb on + strandat 421.851 kb on + strandat 421.986 kb on - strand, within EX28DRAFT_3113at 422.035 kb on + strand, within EX28DRAFT_3113at 422.035 kb on + strand, within EX28DRAFT_3113at 422.036 kb on - strand, within EX28DRAFT_3113at 422.037 kb on + strand, within EX28DRAFT_3113at 422.038 kb on - strand, within EX28DRAFT_3113at 422.044 kb on - strand, within EX28DRAFT_3113at 422.097 kb on + strand, within EX28DRAFT_3113at 422.167 kb on + strandat 422.167 kb on + strandat 422.167 kb on + strandat 422.167 kb on + strandat 422.167 kb on + strandat 422.168 kb on - strandat 422.168 kb on - strandat 422.168 kb on - strandat 422.243 kb on + strandat 422.244 kb on - strandat 422.244 kb on - strandat 422.244 kb on - strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.302 kb on + strand, within EX28DRAFT_3114at 422.302 kb on + strand, within EX28DRAFT_3114at 422.303 kb on - strand, within EX28DRAFT_3114at 422.312 kb on + strand, within EX28DRAFT_3114at 422.312 kb on + strand, within EX28DRAFT_3114at 422.313 kb on - strand, within EX28DRAFT_3114at 422.337 kb on - strand, within EX28DRAFT_3114at 422.347 kb on + strand, within EX28DRAFT_3114at 422.493 kb on - strand, within EX28DRAFT_3114at 422.560 kb on + strand, within EX28DRAFT_3114at 422.577 kb on + strand, within EX28DRAFT_3114at 422.577 kb on + strand, within EX28DRAFT_3114at 422.578 kb on - strand, within EX28DRAFT_3114at 422.578 kb on - strand, within EX28DRAFT_3114at 422.579 kb on + strand, within EX28DRAFT_3114at 422.604 kb on - strand, within EX28DRAFT_3114at 422.650 kb on - strandat 422.661 kb on + strandat 422.661 kb on + strandat 422.701 kb on + strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.705 kb on + strand, within EX28DRAFT_3115at 422.705 kb on + strand, within EX28DRAFT_3115at 422.706 kb on - strand, within EX28DRAFT_3115at 422.733 kb on + strand, within EX28DRAFT_3115at 422.755 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.762 kb on - strand, within EX28DRAFT_3115at 422.776 kb on + strand, within EX28DRAFT_3115at 422.777 kb on - strand, within EX28DRAFT_3115at 422.778 kb on + strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.806 kb on + strand, within EX28DRAFT_3115at 422.859 kb on + strand, within EX28DRAFT_3115at 422.860 kb on - strand, within EX28DRAFT_3115at 422.860 kb on - strand, within EX28DRAFT_3115at 422.880 kb on + strand, within EX28DRAFT_3115at 422.880 kb on + strand, within EX28DRAFT_3115at 422.881 kb on - strand, within EX28DRAFT_3115at 422.900 kb on + strand, within EX28DRAFT_3115at 422.900 kb on + strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.984 kb on + strand, within EX28DRAFT_3115at 423.012 kb on + strand, within EX28DRAFT_3115at 423.012 kb on + strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.014 kb on + strand, within EX28DRAFT_3115at 423.014 kb on + strand, within EX28DRAFT_3115at 423.015 kb on - strand, within EX28DRAFT_3115at 423.015 kb on - strand, within EX28DRAFT_3115at 423.027 kb on + strand, within EX28DRAFT_3115at 423.028 kb on - strand, within EX28DRAFT_3115at 423.046 kb on + strand, within EX28DRAFT_3115at 423.047 kb on - strand, within EX28DRAFT_3115at 423.051 kb on + strand, within EX28DRAFT_3115at 423.143 kb on + strand, within EX28DRAFT_3115at 423.178 kb on + strandat 423.178 kb on + strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.181 kb on - strandat 423.181 kb on - strandat 423.195 kb on + strandat 423.196 kb on - strandat 423.202 kb on - strandat 423.202 kb on - strandat 423.255 kb on - strandat 423.353 kb on + strand, within EX28DRAFT_3116at 423.354 kb on - strand, within EX28DRAFT_3116at 423.356 kb on + strand, within EX28DRAFT_3116at 423.356 kb on + strand, within EX28DRAFT_3116at 423.356 kb on + strand, within EX28DRAFT_3116at 423.357 kb on - strand, within EX28DRAFT_3116at 423.384 kb on - strand, within EX28DRAFT_3116at 423.402 kb on - strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.517 kb on - strand, within EX28DRAFT_3116at 423.517 kb on - strand, within EX28DRAFT_3116at 423.575 kb on - strand, within EX28DRAFT_3116at 423.757 kb on - strand, within EX28DRAFT_3116at 423.779 kb on - strand, within EX28DRAFT_3116at 423.805 kb on + strand, within EX28DRAFT_3116at 423.807 kb on - strand, within EX28DRAFT_3116at 423.807 kb on - strand, within EX28DRAFT_3116at 423.855 kb on - strand, within EX28DRAFT_3116at 423.988 kb on + strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 424.082 kb on + strand, within EX28DRAFT_3116at 424.082 kb on + strand, within EX28DRAFT_3116at 424.083 kb on - strand, within EX28DRAFT_3116

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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421,635 - EX28DRAFT_3112 0.70 +0.7
421,645 + EX28DRAFT_3112 0.72 -0.2
421,645 + EX28DRAFT_3112 0.72 +0.1
421,645 + EX28DRAFT_3112 0.72 +0.1
421,646 - EX28DRAFT_3112 0.72 -0.3
421,657 + EX28DRAFT_3112 0.74 -0.7
421,657 + EX28DRAFT_3112 0.74 +0.0
421,657 + EX28DRAFT_3112 0.74 +0.7
421,658 - EX28DRAFT_3112 0.74 +0.8
421,678 + EX28DRAFT_3112 0.77 +0.1
421,679 - EX28DRAFT_3112 0.77 -0.2
421,703 - EX28DRAFT_3112 0.81 +0.2
421,714 + EX28DRAFT_3112 0.83 -0.1
421,715 - EX28DRAFT_3112 0.83 +0.1
421,764 - +1.4
421,796 + -0.2
421,796 + +0.6
421,796 + +0.2
421,796 + +0.2
421,796 + -1.3
421,796 + +0.5
421,797 - -0.2
421,797 - +0.4
421,797 - +1.2
421,797 - -0.6
421,797 - -0.7
421,797 - -0.8
421,801 - -0.8
421,801 - +0.7
421,808 - +0.1
421,817 - -0.0
421,851 + -0.4
421,851 + +0.3
421,986 - EX28DRAFT_3113 0.43 -0.3
422,035 + EX28DRAFT_3113 0.61 -0.6
422,035 + EX28DRAFT_3113 0.61 -0.2
422,036 - EX28DRAFT_3113 0.61 -0.2
422,037 + EX28DRAFT_3113 0.61 +0.1
422,038 - EX28DRAFT_3113 0.62 -0.3
422,044 - EX28DRAFT_3113 0.64 -0.0
422,097 + EX28DRAFT_3113 0.83 -0.3
422,167 + +0.0
422,167 + -3.5
422,167 + -0.3
422,167 + -0.2
422,167 + -0.9
422,168 - -0.2
422,168 - +0.1
422,168 - -1.0
422,243 + -1.4
422,244 - -0.2
422,244 - +1.5
422,244 - -1.3
422,245 + -0.1
422,245 + +0.6
422,245 + -3.8
422,245 + +0.0
422,245 + +0.1
422,245 + -0.1
422,246 - -0.0
422,246 - -0.1
422,246 - +0.1
422,246 - +0.1
422,246 - -0.5
422,246 - +1.1
422,302 + EX28DRAFT_3114 0.12 -1.2
422,302 + EX28DRAFT_3114 0.12 -0.5
422,303 - EX28DRAFT_3114 0.12 -0.7
422,312 + EX28DRAFT_3114 0.14 +0.7
422,312 + EX28DRAFT_3114 0.14 -1.1
422,313 - EX28DRAFT_3114 0.14 +0.5
422,337 - EX28DRAFT_3114 0.20 -1.3
422,347 + EX28DRAFT_3114 0.23 +1.1
422,493 - EX28DRAFT_3114 0.60 -0.1
422,560 + EX28DRAFT_3114 0.77 -0.2
422,577 + EX28DRAFT_3114 0.81 +2.7
422,577 + EX28DRAFT_3114 0.81 -0.4
422,578 - EX28DRAFT_3114 0.81 +0.2
422,578 - EX28DRAFT_3114 0.81 +1.7
422,579 + EX28DRAFT_3114 0.82 -0.1
422,604 - EX28DRAFT_3114 0.88 +0.1
422,650 - -0.2
422,661 + -0.6
422,661 + +0.0
422,701 + EX28DRAFT_3115 0.11 -0.9
422,702 - EX28DRAFT_3115 0.11 +1.7
422,702 - EX28DRAFT_3115 0.11 +0.1
422,702 - EX28DRAFT_3115 0.11 -0.2
422,705 + EX28DRAFT_3115 0.12 +0.3
422,705 + EX28DRAFT_3115 0.12 -0.5
422,706 - EX28DRAFT_3115 0.12 +0.2
422,733 + EX28DRAFT_3115 0.16 -0.1
422,755 + EX28DRAFT_3115 0.20 -0.1
422,761 + EX28DRAFT_3115 0.21 -0.2
422,761 + EX28DRAFT_3115 0.21 -0.3
422,761 + EX28DRAFT_3115 0.21 -0.7
422,762 - EX28DRAFT_3115 0.21 +1.8
422,776 + EX28DRAFT_3115 0.24 -1.0
422,777 - EX28DRAFT_3115 0.24 +0.0
422,778 + EX28DRAFT_3115 0.24 +0.4
422,779 - EX28DRAFT_3115 0.24 -2.0
422,779 - EX28DRAFT_3115 0.24 +0.5
422,779 - EX28DRAFT_3115 0.24 -0.5
422,779 - EX28DRAFT_3115 0.24 +0.3
422,779 - EX28DRAFT_3115 0.24 -0.4
422,779 - EX28DRAFT_3115 0.24 +0.1
422,806 + EX28DRAFT_3115 0.29 +0.6
422,859 + EX28DRAFT_3115 0.38 -0.4
422,860 - EX28DRAFT_3115 0.38 +0.1
422,860 - EX28DRAFT_3115 0.38 -1.5
422,880 + EX28DRAFT_3115 0.41 -1.7
422,880 + EX28DRAFT_3115 0.41 +0.1
422,881 - EX28DRAFT_3115 0.41 +0.3
422,900 + EX28DRAFT_3115 0.44 -1.0
422,900 + EX28DRAFT_3115 0.44 -0.3
422,901 - EX28DRAFT_3115 0.45 -0.3
422,901 - EX28DRAFT_3115 0.45 -0.3
422,901 - EX28DRAFT_3115 0.45 -0.4
422,901 - EX28DRAFT_3115 0.45 -0.4
422,901 - EX28DRAFT_3115 0.45 -0.0
422,984 + EX28DRAFT_3115 0.58 -0.2
423,012 + EX28DRAFT_3115 0.63 +0.3
423,012 + EX28DRAFT_3115 0.63 +0.4
423,013 - EX28DRAFT_3115 0.63 -0.2
423,013 - EX28DRAFT_3115 0.63 -0.4
423,013 - EX28DRAFT_3115 0.63 -0.0
423,014 + EX28DRAFT_3115 0.63 -0.3
423,014 + EX28DRAFT_3115 0.63 +0.4
423,015 - EX28DRAFT_3115 0.64 -0.0
423,015 - EX28DRAFT_3115 0.64 -0.2
423,027 + EX28DRAFT_3115 0.66 -0.9
423,028 - EX28DRAFT_3115 0.66 -0.9
423,046 + EX28DRAFT_3115 0.69 -1.2
423,047 - EX28DRAFT_3115 0.69 -0.3
423,051 + EX28DRAFT_3115 0.70 -0.5
423,143 + EX28DRAFT_3115 0.85 +0.1
423,178 + -0.2
423,178 + -0.7
423,179 - +1.1
423,179 - -0.5
423,179 - -0.5
423,179 - -0.7
423,179 - -0.3
423,179 - -0.0
423,181 - +0.0
423,181 - -0.4
423,195 + -0.4
423,196 - -0.6
423,202 - +0.1
423,202 - -0.3
423,255 - +0.1
423,353 + EX28DRAFT_3116 0.11 -0.4
423,354 - EX28DRAFT_3116 0.11 -1.3
423,356 + EX28DRAFT_3116 0.12 +0.1
423,356 + EX28DRAFT_3116 0.12 -0.5
423,356 + EX28DRAFT_3116 0.12 +0.7
423,357 - EX28DRAFT_3116 0.12 -2.6
423,384 - EX28DRAFT_3116 0.14 -0.5
423,402 - EX28DRAFT_3116 0.16 +0.4
423,516 + EX28DRAFT_3116 0.26 +0.3
423,516 + EX28DRAFT_3116 0.26 -1.0
423,516 + EX28DRAFT_3116 0.26 +0.0
423,516 + EX28DRAFT_3116 0.26 +0.0
423,516 + EX28DRAFT_3116 0.26 -2.1
423,516 + EX28DRAFT_3116 0.26 -0.8
423,517 - EX28DRAFT_3116 0.26 -0.8
423,517 - EX28DRAFT_3116 0.26 -0.3
423,575 - EX28DRAFT_3116 0.32 -4.0
423,757 - EX28DRAFT_3116 0.48 -0.4
423,779 - EX28DRAFT_3116 0.50 -0.6
423,805 + EX28DRAFT_3116 0.53 +0.2
423,807 - EX28DRAFT_3116 0.53 -1.3
423,807 - EX28DRAFT_3116 0.53 -0.3
423,855 - EX28DRAFT_3116 0.57 +0.6
423,988 + EX28DRAFT_3116 0.70 -0.1
423,989 - EX28DRAFT_3116 0.70 +0.3
423,989 - EX28DRAFT_3116 0.70 +0.5
423,989 - EX28DRAFT_3116 0.70 -0.2
423,989 - EX28DRAFT_3116 0.70 -0.1
423,989 - EX28DRAFT_3116 0.70 -0.1
424,082 + EX28DRAFT_3116 0.78 -0.4
424,082 + EX28DRAFT_3116 0.78 -0.2
424,083 - EX28DRAFT_3116 0.78 +0.4

Or see this region's nucleotide sequence