Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3109 and EX28DRAFT_3110 are separated by 56 nucleotides EX28DRAFT_3110 and EX28DRAFT_3111 are separated by 11 nucleotides EX28DRAFT_3111 and EX28DRAFT_3112 are separated by 58 nucleotides EX28DRAFT_3112 and EX28DRAFT_3113 are separated by 50 nucleotides
EX28DRAFT_3109: EX28DRAFT_3109 - Mu-like prophage FluMu protein gp41, at 419,079 to 419,387
_3109
EX28DRAFT_3110: EX28DRAFT_3110 - phage contractile tail tube protein, P2 family, at 419,444 to 419,962
_3110
EX28DRAFT_3111: EX28DRAFT_3111 - Phage tail sheath protein FI, at 419,974 to 421,161
_3111
EX28DRAFT_3112: EX28DRAFT_3112 - Site-specific recombinases, DNA invertase Pin homologs, at 421,220 to 421,813
_3112
EX28DRAFT_3113: EX28DRAFT_3113 - hypothetical protein, at 421,864 to 422,145
_3113
Position (kb) 419
420
421
422 Strain fitness (log2 ratio) -2
-1
0
1 at 419.000 kb on + strand at 419.117 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.379 kb on - strand at 419.379 kb on - strand at 419.851 kb on - strand, within EX28DRAFT_3110 at 419.851 kb on - strand, within EX28DRAFT_3110 at 419.907 kb on + strand, within EX28DRAFT_3110 at 419.907 kb on + strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.942 kb on - strand at 419.976 kb on - strand at 420.009 kb on - strand at 420.072 kb on - strand at 420.129 kb on - strand, within EX28DRAFT_3111 at 420.150 kb on + strand, within EX28DRAFT_3111 at 420.152 kb on + strand, within EX28DRAFT_3111 at 420.153 kb on - strand, within EX28DRAFT_3111 at 420.153 kb on - strand, within EX28DRAFT_3111 at 420.231 kb on + strand, within EX28DRAFT_3111 at 420.285 kb on + strand, within EX28DRAFT_3111 at 420.331 kb on - strand, within EX28DRAFT_3111 at 420.331 kb on - strand, within EX28DRAFT_3111 at 420.487 kb on - strand, within EX28DRAFT_3111 at 420.661 kb on - strand, within EX28DRAFT_3111 at 420.680 kb on + strand, within EX28DRAFT_3111 at 420.681 kb on - strand, within EX28DRAFT_3111 at 420.822 kb on + strand, within EX28DRAFT_3111 at 421.167 kb on + strand at 421.193 kb on + strand at 421.193 kb on + strand at 421.214 kb on + strand at 421.214 kb on + strand at 421.221 kb on + strand at 421.265 kb on + strand at 421.265 kb on + strand at 421.266 kb on - strand at 421.301 kb on - strand, within EX28DRAFT_3112 at 421.495 kb on + strand, within EX28DRAFT_3112 at 421.561 kb on + strand, within EX28DRAFT_3112 at 421.606 kb on + strand, within EX28DRAFT_3112 at 421.634 kb on + strand, within EX28DRAFT_3112 at 421.635 kb on - strand, within EX28DRAFT_3112 at 421.645 kb on + strand, within EX28DRAFT_3112 at 421.645 kb on + strand, within EX28DRAFT_3112 at 421.645 kb on + strand, within EX28DRAFT_3112 at 421.646 kb on - strand, within EX28DRAFT_3112 at 421.657 kb on + strand, within EX28DRAFT_3112 at 421.657 kb on + strand, within EX28DRAFT_3112 at 421.657 kb on + strand, within EX28DRAFT_3112 at 421.658 kb on - strand, within EX28DRAFT_3112 at 421.678 kb on + strand, within EX28DRAFT_3112 at 421.679 kb on - strand, within EX28DRAFT_3112 at 421.703 kb on - strand, within EX28DRAFT_3112 at 421.714 kb on + strand, within EX28DRAFT_3112 at 421.715 kb on - strand, within EX28DRAFT_3112 at 421.764 kb on - strand at 421.796 kb on + strand at 421.796 kb on + strand at 421.796 kb on + strand at 421.796 kb on + strand at 421.796 kb on + strand at 421.796 kb on + strand at 421.797 kb on - strand at 421.797 kb on - strand at 421.797 kb on - strand at 421.797 kb on - strand at 421.797 kb on - strand at 421.797 kb on - strand at 421.801 kb on - strand at 421.801 kb on - strand at 421.808 kb on - strand at 421.817 kb on - strand at 421.851 kb on + strand at 421.851 kb on + strand at 421.986 kb on - strand, within EX28DRAFT_3113 at 422.035 kb on + strand, within EX28DRAFT_3113 at 422.035 kb on + strand, within EX28DRAFT_3113 at 422.036 kb on - strand, within EX28DRAFT_3113 at 422.037 kb on + strand, within EX28DRAFT_3113 at 422.038 kb on - strand, within EX28DRAFT_3113 at 422.044 kb on - strand, within EX28DRAFT_3113 at 422.097 kb on + strand, within EX28DRAFT_3113
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 419,000 + -0.1 419,117 + EX28DRAFT_3109 0.12 +0.3 419,339 + EX28DRAFT_3109 0.84 -0.3 419,339 + EX28DRAFT_3109 0.84 -2.1 419,339 + EX28DRAFT_3109 0.84 -0.3 419,379 - -0.5 419,379 - -0.6 419,851 - EX28DRAFT_3110 0.78 -0.0 419,851 - EX28DRAFT_3110 0.78 +0.7 419,907 + EX28DRAFT_3110 0.89 -0.5 419,907 + EX28DRAFT_3110 0.89 +0.4 419,908 - EX28DRAFT_3110 0.89 +0.6 419,908 - EX28DRAFT_3110 0.89 +0.6 419,908 - EX28DRAFT_3110 0.89 +0.9 419,942 - -0.4 419,976 - -0.3 420,009 - -0.8 420,072 - +0.2 420,129 - EX28DRAFT_3111 0.13 +0.6 420,150 + EX28DRAFT_3111 0.15 -0.7 420,152 + EX28DRAFT_3111 0.15 -0.2 420,153 - EX28DRAFT_3111 0.15 -0.3 420,153 - EX28DRAFT_3111 0.15 +0.5 420,231 + EX28DRAFT_3111 0.22 +0.6 420,285 + EX28DRAFT_3111 0.26 +1.7 420,331 - EX28DRAFT_3111 0.30 -0.1 420,331 - EX28DRAFT_3111 0.30 -1.0 420,487 - EX28DRAFT_3111 0.43 -1.4 420,661 - EX28DRAFT_3111 0.58 -0.2 420,680 + EX28DRAFT_3111 0.59 -1.3 420,681 - EX28DRAFT_3111 0.60 -0.8 420,822 + EX28DRAFT_3111 0.71 +0.3 421,167 + +0.3 421,193 + -1.4 421,193 + -0.2 421,214 + -0.3 421,214 + +0.2 421,221 + -0.3 421,265 + -0.5 421,265 + +0.3 421,266 - +0.5 421,301 - EX28DRAFT_3112 0.14 -0.1 421,495 + EX28DRAFT_3112 0.46 -1.1 421,561 + EX28DRAFT_3112 0.57 +0.7 421,606 + EX28DRAFT_3112 0.65 -0.0 421,634 + EX28DRAFT_3112 0.70 -0.1 421,635 - EX28DRAFT_3112 0.70 +0.7 421,645 + EX28DRAFT_3112 0.72 -0.2 421,645 + EX28DRAFT_3112 0.72 +0.1 421,645 + EX28DRAFT_3112 0.72 +0.1 421,646 - EX28DRAFT_3112 0.72 -0.3 421,657 + EX28DRAFT_3112 0.74 -0.7 421,657 + EX28DRAFT_3112 0.74 +0.0 421,657 + EX28DRAFT_3112 0.74 +0.7 421,658 - EX28DRAFT_3112 0.74 +0.8 421,678 + EX28DRAFT_3112 0.77 +0.1 421,679 - EX28DRAFT_3112 0.77 -0.2 421,703 - EX28DRAFT_3112 0.81 +0.2 421,714 + EX28DRAFT_3112 0.83 -0.1 421,715 - EX28DRAFT_3112 0.83 +0.1 421,764 - +1.4 421,796 + -0.2 421,796 + +0.6 421,796 + +0.2 421,796 + +0.2 421,796 + -1.3 421,796 + +0.5 421,797 - -0.2 421,797 - +0.4 421,797 - +1.2 421,797 - -0.6 421,797 - -0.7 421,797 - -0.8 421,801 - -0.8 421,801 - +0.7 421,808 - +0.1 421,817 - -0.0 421,851 + -0.4 421,851 + +0.3 421,986 - EX28DRAFT_3113 0.43 -0.3 422,035 + EX28DRAFT_3113 0.61 -0.6 422,035 + EX28DRAFT_3113 0.61 -0.2 422,036 - EX28DRAFT_3113 0.61 -0.2 422,037 + EX28DRAFT_3113 0.61 +0.1 422,038 - EX28DRAFT_3113 0.62 -0.3 422,044 - EX28DRAFT_3113 0.64 -0.0 422,097 + EX28DRAFT_3113 0.83 -0.3
Or see this region's nucleotide sequence