Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3108 and EX28DRAFT_3109 are separated by 144 nucleotides EX28DRAFT_3109 and EX28DRAFT_3110 are separated by 56 nucleotides EX28DRAFT_3110 and EX28DRAFT_3111 are separated by 11 nucleotides
EX28DRAFT_3108: EX28DRAFT_3108 - phage tail tape measure protein, TP901 family, core region, at 416,655 to 418,934
_3108
EX28DRAFT_3109: EX28DRAFT_3109 - Mu-like prophage FluMu protein gp41, at 419,079 to 419,387
_3109
EX28DRAFT_3110: EX28DRAFT_3110 - phage contractile tail tube protein, P2 family, at 419,444 to 419,962
_3110
EX28DRAFT_3111: EX28DRAFT_3111 - Phage tail sheath protein FI, at 419,974 to 421,161
_3111
Position (kb) 419
420 Strain fitness (log2 ratio) -2
-1
0
1 at 418.133 kb on - strand, within EX28DRAFT_3108 at 418.310 kb on + strand, within EX28DRAFT_3108 at 418.593 kb on + strand, within EX28DRAFT_3108 at 418.594 kb on - strand, within EX28DRAFT_3108 at 418.604 kb on - strand, within EX28DRAFT_3108 at 418.613 kb on + strand, within EX28DRAFT_3108 at 418.686 kb on - strand, within EX28DRAFT_3108 at 418.925 kb on + strand at 418.925 kb on + strand at 418.925 kb on + strand at 418.926 kb on - strand at 418.926 kb on - strand at 418.928 kb on + strand at 418.973 kb on - strand at 419.000 kb on + strand at 419.117 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.379 kb on - strand at 419.379 kb on - strand at 419.851 kb on - strand, within EX28DRAFT_3110 at 419.851 kb on - strand, within EX28DRAFT_3110 at 419.907 kb on + strand, within EX28DRAFT_3110 at 419.907 kb on + strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.942 kb on - strand at 419.976 kb on - strand at 420.009 kb on - strand at 420.072 kb on - strand at 420.129 kb on - strand, within EX28DRAFT_3111 at 420.150 kb on + strand, within EX28DRAFT_3111 at 420.152 kb on + strand, within EX28DRAFT_3111 at 420.153 kb on - strand, within EX28DRAFT_3111 at 420.153 kb on - strand, within EX28DRAFT_3111 at 420.231 kb on + strand, within EX28DRAFT_3111 at 420.285 kb on + strand, within EX28DRAFT_3111 at 420.331 kb on - strand, within EX28DRAFT_3111 at 420.331 kb on - strand, within EX28DRAFT_3111
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 418,133 - EX28DRAFT_3108 0.65 +0.8 418,310 + EX28DRAFT_3108 0.73 -0.2 418,593 + EX28DRAFT_3108 0.85 -0.9 418,594 - EX28DRAFT_3108 0.85 -0.2 418,604 - EX28DRAFT_3108 0.85 -0.3 418,613 + EX28DRAFT_3108 0.86 +0.6 418,686 - EX28DRAFT_3108 0.89 -0.0 418,925 + -0.1 418,925 + +0.2 418,925 + +0.3 418,926 - +0.1 418,926 - -0.4 418,928 + -0.4 418,973 - -0.3 419,000 + -0.1 419,117 + EX28DRAFT_3109 0.12 +0.3 419,339 + EX28DRAFT_3109 0.84 -0.3 419,339 + EX28DRAFT_3109 0.84 -2.1 419,339 + EX28DRAFT_3109 0.84 -0.3 419,379 - -0.5 419,379 - -0.6 419,851 - EX28DRAFT_3110 0.78 -0.0 419,851 - EX28DRAFT_3110 0.78 +0.7 419,907 + EX28DRAFT_3110 0.89 -0.5 419,907 + EX28DRAFT_3110 0.89 +0.4 419,908 - EX28DRAFT_3110 0.89 +0.6 419,908 - EX28DRAFT_3110 0.89 +0.6 419,908 - EX28DRAFT_3110 0.89 +0.9 419,942 - -0.4 419,976 - -0.3 420,009 - -0.8 420,072 - +0.2 420,129 - EX28DRAFT_3111 0.13 +0.6 420,150 + EX28DRAFT_3111 0.15 -0.7 420,152 + EX28DRAFT_3111 0.15 -0.2 420,153 - EX28DRAFT_3111 0.15 -0.3 420,153 - EX28DRAFT_3111 0.15 +0.5 420,231 + EX28DRAFT_3111 0.22 +0.6 420,285 + EX28DRAFT_3111 0.26 +1.7 420,331 - EX28DRAFT_3111 0.30 -0.1 420,331 - EX28DRAFT_3111 0.30 -1.0
Or see this region's nucleotide sequence