Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3107

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3106 and EX28DRAFT_3107 overlap by 4 nucleotidesEX28DRAFT_3107 and EX28DRAFT_3108 are separated by 11 nucleotides EX28DRAFT_3106: EX28DRAFT_3106 - Phage protein D, at 415,028 to 416,182 _3106 EX28DRAFT_3107: EX28DRAFT_3107 - Phage protein U, at 416,179 to 416,643 _3107 EX28DRAFT_3108: EX28DRAFT_3108 - phage tail tape measure protein, TP901 family, core region, at 416,655 to 418,934 _3108 Position (kb) 416 417Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 415.232 kb on + strand, within EX28DRAFT_3106at 415.320 kb on - strand, within EX28DRAFT_3106at 415.513 kb on - strand, within EX28DRAFT_3106at 415.628 kb on - strand, within EX28DRAFT_3106at 415.664 kb on - strand, within EX28DRAFT_3106at 415.718 kb on - strand, within EX28DRAFT_3106at 415.921 kb on + strand, within EX28DRAFT_3106at 415.921 kb on + strand, within EX28DRAFT_3106at 416.030 kb on - strand, within EX28DRAFT_3106at 416.081 kb on - strandat 416.125 kb on + strandat 416.126 kb on - strandat 416.132 kb on - strandat 416.132 kb on - strandat 416.284 kb on - strand, within EX28DRAFT_3107at 416.295 kb on + strand, within EX28DRAFT_3107at 416.301 kb on + strand, within EX28DRAFT_3107at 416.317 kb on - strand, within EX28DRAFT_3107at 416.364 kb on + strand, within EX28DRAFT_3107at 416.365 kb on - strand, within EX28DRAFT_3107at 416.396 kb on - strand, within EX28DRAFT_3107at 416.480 kb on - strand, within EX28DRAFT_3107at 416.480 kb on - strand, within EX28DRAFT_3107at 416.480 kb on - strand, within EX28DRAFT_3107at 416.493 kb on + strand, within EX28DRAFT_3107at 416.520 kb on - strand, within EX28DRAFT_3107at 416.594 kb on + strand, within EX28DRAFT_3107at 416.660 kb on + strandat 416.661 kb on - strandat 416.661 kb on - strandat 416.661 kb on - strandat 416.662 kb on + strandat 416.662 kb on + strandat 416.662 kb on + strandat 416.662 kb on + strandat 416.662 kb on + strandat 416.663 kb on - strandat 416.663 kb on - strandat 416.663 kb on - strandat 416.663 kb on - strandat 416.666 kb on + strandat 416.666 kb on + strandat 416.666 kb on + strandat 416.666 kb on + strandat 416.666 kb on + strandat 416.667 kb on - strandat 416.705 kb on + strandat 416.706 kb on - strandat 416.708 kb on + strandat 416.708 kb on + strandat 416.708 kb on + strandat 416.708 kb on + strandat 416.708 kb on + strandat 416.709 kb on - strandat 416.709 kb on - strandat 416.709 kb on - strandat 416.777 kb on + strandat 416.778 kb on - strandat 416.780 kb on - strandat 416.803 kb on + strandat 416.803 kb on + strandat 416.874 kb on - strandat 416.875 kb on + strandat 416.876 kb on - strandat 416.876 kb on - strandat 416.954 kb on + strand, within EX28DRAFT_3108at 416.999 kb on + strand, within EX28DRAFT_3108at 416.999 kb on + strand, within EX28DRAFT_3108at 417.000 kb on - strand, within EX28DRAFT_3108at 417.152 kb on + strand, within EX28DRAFT_3108at 417.153 kb on - strand, within EX28DRAFT_3108at 417.153 kb on - strand, within EX28DRAFT_3108at 417.260 kb on - strand, within EX28DRAFT_3108at 417.438 kb on + strand, within EX28DRAFT_3108at 417.450 kb on + strand, within EX28DRAFT_3108at 417.562 kb on - strand, within EX28DRAFT_3108

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
415,232 + EX28DRAFT_3106 0.18 -0.4
415,320 - EX28DRAFT_3106 0.25 -0.4
415,513 - EX28DRAFT_3106 0.42 -0.1
415,628 - EX28DRAFT_3106 0.52 +0.2
415,664 - EX28DRAFT_3106 0.55 +0.4
415,718 - EX28DRAFT_3106 0.60 -0.8
415,921 + EX28DRAFT_3106 0.77 -0.3
415,921 + EX28DRAFT_3106 0.77 -0.4
416,030 - EX28DRAFT_3106 0.87 -0.8
416,081 - +0.1
416,125 + -0.6
416,126 - +0.6
416,132 - -0.3
416,132 - +0.0
416,284 - EX28DRAFT_3107 0.23 +0.2
416,295 + EX28DRAFT_3107 0.25 -0.1
416,301 + EX28DRAFT_3107 0.26 -0.9
416,317 - EX28DRAFT_3107 0.30 -0.0
416,364 + EX28DRAFT_3107 0.40 -0.4
416,365 - EX28DRAFT_3107 0.40 -0.2
416,396 - EX28DRAFT_3107 0.47 -0.8
416,480 - EX28DRAFT_3107 0.65 -0.4
416,480 - EX28DRAFT_3107 0.65 -0.3
416,480 - EX28DRAFT_3107 0.65 -0.7
416,493 + EX28DRAFT_3107 0.68 -2.0
416,520 - EX28DRAFT_3107 0.73 -1.0
416,594 + EX28DRAFT_3107 0.89 -0.2
416,660 + -4.4
416,661 - +0.0
416,661 - +0.1
416,661 - +0.0
416,662 + -0.7
416,662 + -0.4
416,662 + +0.7
416,662 + +1.9
416,662 + +0.3
416,663 - +1.4
416,663 - -0.0
416,663 - +0.7
416,663 - +0.2
416,666 + +0.1
416,666 + -0.0
416,666 + -0.1
416,666 + -0.2
416,666 + -0.4
416,667 - -0.1
416,705 + -0.9
416,706 - -0.2
416,708 + -0.7
416,708 + -0.8
416,708 + +0.5
416,708 + -3.1
416,708 + +0.0
416,709 - -0.6
416,709 - +0.4
416,709 - -0.9
416,777 + -0.3
416,778 - +0.6
416,780 - +0.6
416,803 + -0.3
416,803 + +0.6
416,874 - -0.8
416,875 + +0.0
416,876 - -1.7
416,876 - -1.0
416,954 + EX28DRAFT_3108 0.13 +0.8
416,999 + EX28DRAFT_3108 0.15 +0.0
416,999 + EX28DRAFT_3108 0.15 -0.7
417,000 - EX28DRAFT_3108 0.15 -0.2
417,152 + EX28DRAFT_3108 0.22 -1.5
417,153 - EX28DRAFT_3108 0.22 +0.3
417,153 - EX28DRAFT_3108 0.22 +0.3
417,260 - EX28DRAFT_3108 0.27 +0.4
417,438 + EX28DRAFT_3108 0.34 -0.4
417,450 + EX28DRAFT_3108 0.35 +0.1
417,562 - EX28DRAFT_3108 0.40 +0.0

Or see this region's nucleotide sequence