Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3096 and EX28DRAFT_3097 overlap by 1 nucleotides EX28DRAFT_3097 and EX28DRAFT_3098 are separated by 9 nucleotides EX28DRAFT_3098 and EX28DRAFT_3099 are separated by 44 nucleotides
EX28DRAFT_3096: EX28DRAFT_3096 - Hydrogenase/urease accessory protein, at 406,656 to 407,195
_3096
EX28DRAFT_3097: EX28DRAFT_3097 - Urease accessory protein UreF, at 407,195 to 407,869
_3097
EX28DRAFT_3098: EX28DRAFT_3098 - urease accessory protein UreG, at 407,879 to 408,496
_3098
EX28DRAFT_3099: EX28DRAFT_3099 - tRNA threonylcarbamoyl adenosine modification protein TsaD, at 408,541 to 409,554
_3099
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 406.956 kb on - strand, within EX28DRAFT_3096 at 407.396 kb on + strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.447 kb on + strand, within EX28DRAFT_3097 at 407.447 kb on + strand, within EX28DRAFT_3097 at 407.569 kb on + strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.653 kb on + strand, within EX28DRAFT_3097 at 407.654 kb on - strand, within EX28DRAFT_3097 at 407.654 kb on - strand, within EX28DRAFT_3097 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.982 kb on - strand, within EX28DRAFT_3098 at 407.982 kb on - strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.248 kb on + strand, within EX28DRAFT_3098 at 408.248 kb on + strand, within EX28DRAFT_3098 at 408.249 kb on - strand, within EX28DRAFT_3098 at 408.332 kb on - strand, within EX28DRAFT_3098 at 408.542 kb on + strand at 408.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 406,956 - EX28DRAFT_3096 0.56 +0.4 407,396 + EX28DRAFT_3097 0.30 +0.3 407,423 - EX28DRAFT_3097 0.34 -0.3 407,423 - EX28DRAFT_3097 0.34 -0.8 407,423 - EX28DRAFT_3097 0.34 +0.2 407,447 + EX28DRAFT_3097 0.37 -0.4 407,447 + EX28DRAFT_3097 0.37 -0.3 407,569 + EX28DRAFT_3097 0.55 +0.6 407,570 - EX28DRAFT_3097 0.56 +0.3 407,570 - EX28DRAFT_3097 0.56 -0.7 407,570 - EX28DRAFT_3097 0.56 +0.6 407,653 + EX28DRAFT_3097 0.68 +0.3 407,654 - EX28DRAFT_3097 0.68 +0.1 407,654 - EX28DRAFT_3097 0.68 -0.4 407,981 + EX28DRAFT_3098 0.17 -0.2 407,981 + EX28DRAFT_3098 0.17 -0.0 407,981 + EX28DRAFT_3098 0.17 -2.5 407,981 + EX28DRAFT_3098 0.17 +0.7 407,982 - EX28DRAFT_3098 0.17 +0.2 407,982 - EX28DRAFT_3098 0.17 -0.7 408,011 + EX28DRAFT_3098 0.21 -2.2 408,011 + EX28DRAFT_3098 0.21 -0.6 408,011 + EX28DRAFT_3098 0.21 -1.0 408,012 - EX28DRAFT_3098 0.22 +0.9 408,012 - EX28DRAFT_3098 0.22 -0.6 408,012 - EX28DRAFT_3098 0.22 -0.7 408,248 + EX28DRAFT_3098 0.60 +0.0 408,248 + EX28DRAFT_3098 0.60 +0.9 408,249 - EX28DRAFT_3098 0.60 +0.3 408,332 - EX28DRAFT_3098 0.73 +0.2 408,542 + -0.4 408,543 - -3.3
Or see this region's nucleotide sequence