Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3094 and EX28DRAFT_3095 are separated by 9 nucleotides EX28DRAFT_3095 and EX28DRAFT_3096 are separated by 9 nucleotides EX28DRAFT_3096 and EX28DRAFT_3097 overlap by 1 nucleotides
EX28DRAFT_3094: EX28DRAFT_3094 - urease, alpha subunit, at 404,469 to 406,172
_3094
EX28DRAFT_3095: EX28DRAFT_3095 - Urease accessory protein UreE, at 406,182 to 406,646
_3095
EX28DRAFT_3096: EX28DRAFT_3096 - Hydrogenase/urease accessory protein, at 406,656 to 407,195
_3096
EX28DRAFT_3097: EX28DRAFT_3097 - Urease accessory protein UreF, at 407,195 to 407,869
_3097
Position (kb) 406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.189 kb on - strand, within EX28DRAFT_3094 at 405.344 kb on + strand, within EX28DRAFT_3094 at 405.363 kb on - strand, within EX28DRAFT_3094 at 405.379 kb on - strand, within EX28DRAFT_3094 at 405.650 kb on + strand, within EX28DRAFT_3094 at 405.684 kb on - strand, within EX28DRAFT_3094 at 405.684 kb on - strand, within EX28DRAFT_3094 at 405.687 kb on + strand, within EX28DRAFT_3094 at 405.688 kb on - strand, within EX28DRAFT_3094 at 405.688 kb on - strand, within EX28DRAFT_3094 at 405.942 kb on - strand, within EX28DRAFT_3094 at 406.067 kb on + strand at 406.068 kb on - strand at 406.117 kb on + strand at 406.188 kb on + strand at 406.188 kb on + strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.193 kb on - strand at 406.504 kb on - strand, within EX28DRAFT_3095 at 406.596 kb on + strand, within EX28DRAFT_3095 at 406.597 kb on - strand, within EX28DRAFT_3095 at 406.599 kb on - strand, within EX28DRAFT_3095 at 406.599 kb on - strand, within EX28DRAFT_3095 at 406.644 kb on + strand at 406.666 kb on - strand at 406.666 kb on - strand at 406.956 kb on - strand, within EX28DRAFT_3096 at 407.396 kb on + strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.447 kb on + strand, within EX28DRAFT_3097 at 407.447 kb on + strand, within EX28DRAFT_3097 at 407.569 kb on + strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 405,189 - EX28DRAFT_3094 0.42 -0.3 405,344 + EX28DRAFT_3094 0.51 -0.7 405,363 - EX28DRAFT_3094 0.52 +0.0 405,379 - EX28DRAFT_3094 0.53 +0.6 405,650 + EX28DRAFT_3094 0.69 -0.1 405,684 - EX28DRAFT_3094 0.71 +0.5 405,684 - EX28DRAFT_3094 0.71 +0.4 405,687 + EX28DRAFT_3094 0.71 -0.5 405,688 - EX28DRAFT_3094 0.72 -0.6 405,688 - EX28DRAFT_3094 0.72 -0.5 405,942 - EX28DRAFT_3094 0.86 +0.5 406,067 + -1.5 406,068 - +0.3 406,117 + +0.1 406,188 + +0.6 406,188 + +0.0 406,189 - -0.2 406,189 - -0.6 406,189 - +2.5 406,189 - +0.1 406,193 - +0.5 406,504 - EX28DRAFT_3095 0.69 -0.3 406,596 + EX28DRAFT_3095 0.89 -0.7 406,597 - EX28DRAFT_3095 0.89 +0.1 406,599 - EX28DRAFT_3095 0.90 -1.1 406,599 - EX28DRAFT_3095 0.90 -2.6 406,644 + -0.7 406,666 - +0.6 406,666 - -0.3 406,956 - EX28DRAFT_3096 0.56 +0.4 407,396 + EX28DRAFT_3097 0.30 +0.3 407,423 - EX28DRAFT_3097 0.34 -0.3 407,423 - EX28DRAFT_3097 0.34 -0.8 407,423 - EX28DRAFT_3097 0.34 +0.2 407,447 + EX28DRAFT_3097 0.37 -0.4 407,447 + EX28DRAFT_3097 0.37 -0.3 407,569 + EX28DRAFT_3097 0.55 +0.6 407,570 - EX28DRAFT_3097 0.56 +0.3 407,570 - EX28DRAFT_3097 0.56 -0.7 407,570 - EX28DRAFT_3097 0.56 +0.6
Or see this region's nucleotide sequence