Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3091 and EX28DRAFT_3092 are separated by 10 nucleotides EX28DRAFT_3092 and EX28DRAFT_3093 are separated by 10 nucleotides EX28DRAFT_3093 and EX28DRAFT_3094 overlap by 8 nucleotides EX28DRAFT_3094 and EX28DRAFT_3095 are separated by 9 nucleotides EX28DRAFT_3095 and EX28DRAFT_3096 are separated by 9 nucleotides
EX28DRAFT_3091: EX28DRAFT_3091 - Urease accessory protein UreH, at 403,011 to 403,838
_3091
EX28DRAFT_3092: EX28DRAFT_3092 - urease, gamma subunit, at 403,849 to 404,151
_3092
EX28DRAFT_3093: EX28DRAFT_3093 - urease, beta subunit, at 404,162 to 404,476
_3093
EX28DRAFT_3094: EX28DRAFT_3094 - urease, alpha subunit, at 404,469 to 406,172
_3094
EX28DRAFT_3095: EX28DRAFT_3095 - Urease accessory protein UreE, at 406,182 to 406,646
_3095
EX28DRAFT_3096: EX28DRAFT_3096 - Hydrogenase/urease accessory protein, at 406,656 to 407,195
_3096
Position (kb) 404
405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 403.528 kb on + strand, within EX28DRAFT_3091 at 403.529 kb on - strand, within EX28DRAFT_3091 at 403.623 kb on + strand, within EX28DRAFT_3091 at 403.624 kb on - strand, within EX28DRAFT_3091 at 403.836 kb on + strand at 403.836 kb on + strand at 403.837 kb on - strand at 403.837 kb on - strand at 403.942 kb on + strand, within EX28DRAFT_3092 at 404.288 kb on + strand, within EX28DRAFT_3093 at 404.289 kb on - strand, within EX28DRAFT_3093 at 404.451 kb on + strand at 404.477 kb on + strand at 404.494 kb on - strand at 404.502 kb on - strand at 404.502 kb on - strand at 404.525 kb on + strand at 404.526 kb on - strand at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.665 kb on + strand, within EX28DRAFT_3094 at 404.666 kb on - strand, within EX28DRAFT_3094 at 405.189 kb on - strand, within EX28DRAFT_3094 at 405.344 kb on + strand, within EX28DRAFT_3094 at 405.363 kb on - strand, within EX28DRAFT_3094 at 405.379 kb on - strand, within EX28DRAFT_3094 at 405.650 kb on + strand, within EX28DRAFT_3094 at 405.684 kb on - strand, within EX28DRAFT_3094 at 405.684 kb on - strand, within EX28DRAFT_3094 at 405.687 kb on + strand, within EX28DRAFT_3094 at 405.688 kb on - strand, within EX28DRAFT_3094 at 405.688 kb on - strand, within EX28DRAFT_3094 at 405.942 kb on - strand, within EX28DRAFT_3094 at 406.067 kb on + strand at 406.068 kb on - strand at 406.117 kb on + strand at 406.188 kb on + strand at 406.188 kb on + strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.193 kb on - strand at 406.504 kb on - strand, within EX28DRAFT_3095 at 406.596 kb on + strand, within EX28DRAFT_3095 at 406.597 kb on - strand, within EX28DRAFT_3095 at 406.599 kb on - strand, within EX28DRAFT_3095 at 406.599 kb on - strand, within EX28DRAFT_3095 at 406.644 kb on + strand at 406.666 kb on - strand at 406.666 kb on - strand at 406.956 kb on - strand, within EX28DRAFT_3096
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 403,528 + EX28DRAFT_3091 0.62 +0.6 403,529 - EX28DRAFT_3091 0.63 -0.6 403,623 + EX28DRAFT_3091 0.74 +0.3 403,624 - EX28DRAFT_3091 0.74 -0.1 403,836 + +0.4 403,836 + +0.1 403,837 - -0.0 403,837 - -0.5 403,942 + EX28DRAFT_3092 0.31 +0.3 404,288 + EX28DRAFT_3093 0.40 -0.3 404,289 - EX28DRAFT_3093 0.40 -2.8 404,451 + +0.7 404,477 + +0.3 404,494 - -0.4 404,502 - +2.3 404,502 - -2.0 404,525 + -0.4 404,526 - -0.3 404,665 + EX28DRAFT_3094 0.12 +1.0 404,665 + EX28DRAFT_3094 0.12 -0.8 404,665 + EX28DRAFT_3094 0.12 -1.4 404,665 + EX28DRAFT_3094 0.12 -0.5 404,665 + EX28DRAFT_3094 0.12 -2.3 404,666 - EX28DRAFT_3094 0.12 -0.1 405,189 - EX28DRAFT_3094 0.42 -0.3 405,344 + EX28DRAFT_3094 0.51 -0.7 405,363 - EX28DRAFT_3094 0.52 +0.0 405,379 - EX28DRAFT_3094 0.53 +0.6 405,650 + EX28DRAFT_3094 0.69 -0.1 405,684 - EX28DRAFT_3094 0.71 +0.5 405,684 - EX28DRAFT_3094 0.71 +0.4 405,687 + EX28DRAFT_3094 0.71 -0.5 405,688 - EX28DRAFT_3094 0.72 -0.6 405,688 - EX28DRAFT_3094 0.72 -0.5 405,942 - EX28DRAFT_3094 0.86 +0.5 406,067 + -1.5 406,068 - +0.3 406,117 + +0.1 406,188 + +0.6 406,188 + +0.0 406,189 - -0.2 406,189 - -0.6 406,189 - +2.5 406,189 - +0.1 406,193 - +0.5 406,504 - EX28DRAFT_3095 0.69 -0.3 406,596 + EX28DRAFT_3095 0.89 -0.7 406,597 - EX28DRAFT_3095 0.89 +0.1 406,599 - EX28DRAFT_3095 0.90 -1.1 406,599 - EX28DRAFT_3095 0.90 -2.6 406,644 + -0.7 406,666 - +0.6 406,666 - -0.3 406,956 - EX28DRAFT_3096 0.56 +0.4
Or see this region's nucleotide sequence