Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3067

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3066 and EX28DRAFT_3067 are separated by 386 nucleotidesEX28DRAFT_3067 and EX28DRAFT_3068 are separated by 83 nucleotides EX28DRAFT_3066: EX28DRAFT_3066 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 375,027 to 375,839 _3066 EX28DRAFT_3067: EX28DRAFT_3067 - TonB-dependent siderophore receptor, at 376,226 to 378,367 _3067 EX28DRAFT_3068: EX28DRAFT_3068 - DNA topoisomerase IV, B subunit, proteobacterial, at 378,451 to 380,343 _3068 Position (kb) 376 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2at 375.343 kb on + strand, within EX28DRAFT_3066at 375.343 kb on + strand, within EX28DRAFT_3066at 375.344 kb on - strand, within EX28DRAFT_3066at 375.344 kb on - strand, within EX28DRAFT_3066at 375.344 kb on - strand, within EX28DRAFT_3066at 375.344 kb on - strand, within EX28DRAFT_3066at 375.684 kb on + strand, within EX28DRAFT_3066at 375.729 kb on + strand, within EX28DRAFT_3066at 375.758 kb on + strandat 375.759 kb on - strandat 375.853 kb on + strandat 375.854 kb on - strandat 375.857 kb on - strandat 375.870 kb on - strandat 376.048 kb on + strandat 376.119 kb on + strandat 376.119 kb on + strandat 376.157 kb on + strandat 376.158 kb on - strandat 376.205 kb on + strandat 376.218 kb on + strandat 376.218 kb on + strandat 376.218 kb on + strandat 376.218 kb on + strandat 376.218 kb on + strandat 376.219 kb on - strandat 376.219 kb on - strandat 376.219 kb on - strandat 376.219 kb on - strandat 376.219 kb on - strandat 376.219 kb on - strandat 376.224 kb on + strandat 376.224 kb on + strandat 376.224 kb on + strandat 376.225 kb on - strandat 376.225 kb on - strandat 376.225 kb on - strandat 376.225 kb on - strandat 376.231 kb on + strandat 376.232 kb on - strandat 376.328 kb on - strandat 376.366 kb on + strandat 376.405 kb on + strandat 376.406 kb on - strandat 376.406 kb on - strandat 376.406 kb on - strandat 376.519 kb on + strand, within EX28DRAFT_3067at 376.520 kb on + strand, within EX28DRAFT_3067at 376.521 kb on - strand, within EX28DRAFT_3067at 376.561 kb on + strand, within EX28DRAFT_3067at 376.786 kb on + strand, within EX28DRAFT_3067at 376.786 kb on + strand, within EX28DRAFT_3067at 376.901 kb on - strand, within EX28DRAFT_3067at 376.996 kb on + strand, within EX28DRAFT_3067at 377.174 kb on + strand, within EX28DRAFT_3067at 377.185 kb on + strand, within EX28DRAFT_3067at 377.189 kb on + strand, within EX28DRAFT_3067at 377.189 kb on + strand, within EX28DRAFT_3067at 377.190 kb on - strand, within EX28DRAFT_3067at 377.190 kb on - strand, within EX28DRAFT_3067at 377.219 kb on + strand, within EX28DRAFT_3067at 377.281 kb on + strand, within EX28DRAFT_3067at 377.281 kb on + strand, within EX28DRAFT_3067at 377.331 kb on - strand, within EX28DRAFT_3067at 377.334 kb on - strand, within EX28DRAFT_3067at 377.360 kb on + strand, within EX28DRAFT_3067at 377.369 kb on + strand, within EX28DRAFT_3067at 377.402 kb on - strand, within EX28DRAFT_3067at 377.426 kb on + strand, within EX28DRAFT_3067at 377.427 kb on - strand, within EX28DRAFT_3067at 377.507 kb on + strand, within EX28DRAFT_3067at 377.508 kb on - strand, within EX28DRAFT_3067at 377.579 kb on + strand, within EX28DRAFT_3067at 377.580 kb on - strand, within EX28DRAFT_3067at 377.580 kb on - strand, within EX28DRAFT_3067at 377.582 kb on + strand, within EX28DRAFT_3067at 377.583 kb on - strand, within EX28DRAFT_3067at 377.669 kb on + strand, within EX28DRAFT_3067at 377.672 kb on - strand, within EX28DRAFT_3067at 377.720 kb on - strand, within EX28DRAFT_3067at 377.720 kb on - strand, within EX28DRAFT_3067at 377.744 kb on + strand, within EX28DRAFT_3067at 377.781 kb on - strand, within EX28DRAFT_3067at 377.865 kb on - strand, within EX28DRAFT_3067at 377.971 kb on + strand, within EX28DRAFT_3067at 377.971 kb on + strand, within EX28DRAFT_3067at 378.021 kb on - strand, within EX28DRAFT_3067at 378.078 kb on - strand, within EX28DRAFT_3067at 378.107 kb on - strand, within EX28DRAFT_3067at 378.174 kb on - strandat 378.174 kb on - strandat 378.174 kb on - strandat 378.225 kb on + strandat 378.225 kb on + strandat 378.225 kb on + strandat 378.271 kb on + strandat 378.278 kb on + strandat 378.279 kb on - strandat 378.281 kb on + strandat 378.282 kb on - strandat 378.282 kb on - strandat 378.346 kb on + strandat 378.370 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
375,343 + EX28DRAFT_3066 0.39 +0.1
375,343 + EX28DRAFT_3066 0.39 -0.2
375,344 - EX28DRAFT_3066 0.39 -1.1
375,344 - EX28DRAFT_3066 0.39 -0.5
375,344 - EX28DRAFT_3066 0.39 +0.1
375,344 - EX28DRAFT_3066 0.39 +0.2
375,684 + EX28DRAFT_3066 0.81 -1.2
375,729 + EX28DRAFT_3066 0.86 +0.2
375,758 + +0.0
375,759 - +0.2
375,853 + -0.0
375,854 - +1.1
375,857 - -0.1
375,870 - +0.5
376,048 + -0.0
376,119 + +0.1
376,119 + +0.1
376,157 + -1.5
376,158 - -0.3
376,205 + +0.5
376,218 + +0.1
376,218 + +1.3
376,218 + -0.3
376,218 + +0.3
376,218 + -0.0
376,219 - -0.6
376,219 - +0.1
376,219 - -0.3
376,219 - +0.2
376,219 - +0.5
376,219 - -0.4
376,224 + +0.1
376,224 + +0.7
376,224 + +0.2
376,225 - +0.3
376,225 - -2.0
376,225 - +0.3
376,225 - -0.1
376,231 + -0.7
376,232 - -0.4
376,328 - +0.0
376,366 + +0.1
376,405 + -0.9
376,406 - -0.8
376,406 - +0.1
376,406 - +0.4
376,519 + EX28DRAFT_3067 0.14 +0.3
376,520 + EX28DRAFT_3067 0.14 -0.1
376,521 - EX28DRAFT_3067 0.14 -0.0
376,561 + EX28DRAFT_3067 0.16 +0.2
376,786 + EX28DRAFT_3067 0.26 +0.2
376,786 + EX28DRAFT_3067 0.26 -1.0
376,901 - EX28DRAFT_3067 0.32 -0.9
376,996 + EX28DRAFT_3067 0.36 +0.1
377,174 + EX28DRAFT_3067 0.44 +0.8
377,185 + EX28DRAFT_3067 0.45 +0.4
377,189 + EX28DRAFT_3067 0.45 -2.1
377,189 + EX28DRAFT_3067 0.45 +0.5
377,190 - EX28DRAFT_3067 0.45 +0.6
377,190 - EX28DRAFT_3067 0.45 -0.4
377,219 + EX28DRAFT_3067 0.46 +0.3
377,281 + EX28DRAFT_3067 0.49 -0.1
377,281 + EX28DRAFT_3067 0.49 -0.2
377,331 - EX28DRAFT_3067 0.52 -0.1
377,334 - EX28DRAFT_3067 0.52 +1.1
377,360 + EX28DRAFT_3067 0.53 -0.3
377,369 + EX28DRAFT_3067 0.53 +0.1
377,402 - EX28DRAFT_3067 0.55 -0.6
377,426 + EX28DRAFT_3067 0.56 +0.2
377,427 - EX28DRAFT_3067 0.56 +0.4
377,507 + EX28DRAFT_3067 0.60 -1.6
377,508 - EX28DRAFT_3067 0.60 +0.5
377,579 + EX28DRAFT_3067 0.63 -0.2
377,580 - EX28DRAFT_3067 0.63 +0.8
377,580 - EX28DRAFT_3067 0.63 -0.2
377,582 + EX28DRAFT_3067 0.63 +0.0
377,583 - EX28DRAFT_3067 0.63 +0.2
377,669 + EX28DRAFT_3067 0.67 -0.9
377,672 - EX28DRAFT_3067 0.68 +0.2
377,720 - EX28DRAFT_3067 0.70 -0.2
377,720 - EX28DRAFT_3067 0.70 +0.2
377,744 + EX28DRAFT_3067 0.71 +0.5
377,781 - EX28DRAFT_3067 0.73 -0.6
377,865 - EX28DRAFT_3067 0.77 -0.2
377,971 + EX28DRAFT_3067 0.81 +0.3
377,971 + EX28DRAFT_3067 0.81 +1.6
378,021 - EX28DRAFT_3067 0.84 +0.3
378,078 - EX28DRAFT_3067 0.86 -0.2
378,107 - EX28DRAFT_3067 0.88 +0.7
378,174 - +0.8
378,174 - +0.2
378,174 - -0.0
378,225 + -0.9
378,225 + -0.0
378,225 + -0.9
378,271 + +2.3
378,278 + -0.4
378,279 - -0.4
378,281 + -0.7
378,282 - +0.3
378,282 - +0.2
378,346 + +0.3
378,370 + -0.2

Or see this region's nucleotide sequence