Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3062 and EX28DRAFT_3063 overlap by 4 nucleotides EX28DRAFT_3063 and EX28DRAFT_3064 are separated by 9 nucleotides EX28DRAFT_3064 and EX28DRAFT_3065 overlap by 4 nucleotides EX28DRAFT_3065 and EX28DRAFT_3066 overlap by 4 nucleotides
EX28DRAFT_3062: EX28DRAFT_3062 - transcriptional regulator, RpiR family, at 371,166 to 372,053
_3062
EX28DRAFT_3063: EX28DRAFT_3063 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 372,050 to 373,000
_3063
EX28DRAFT_3064: EX28DRAFT_3064 - ABC-type Fe3+-siderophore transport system, permease component, at 373,010 to 374,050
_3064
EX28DRAFT_3065: EX28DRAFT_3065 - ABC-type Fe3+-siderophore transport system, permease component, at 374,047 to 375,030
_3065
EX28DRAFT_3066: EX28DRAFT_3066 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 375,027 to 375,839
_3066
Position (kb) 373
374
375 Strain fitness (log2 ratio) -1
0
1 at 372.095 kb on + strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.127 kb on - strand at 372.405 kb on + strand, within EX28DRAFT_3063 at 372.406 kb on - strand, within EX28DRAFT_3063 at 372.526 kb on + strand, within EX28DRAFT_3063 at 372.568 kb on - strand, within EX28DRAFT_3063 at 372.568 kb on - strand, within EX28DRAFT_3063 at 372.664 kb on + strand, within EX28DRAFT_3063 at 372.728 kb on - strand, within EX28DRAFT_3063 at 372.728 kb on - strand, within EX28DRAFT_3063 at 372.929 kb on - strand at 372.990 kb on - strand at 373.012 kb on - strand at 373.239 kb on - strand, within EX28DRAFT_3064 at 373.239 kb on - strand, within EX28DRAFT_3064 at 373.511 kb on - strand, within EX28DRAFT_3064 at 373.604 kb on + strand, within EX28DRAFT_3064 at 373.604 kb on + strand, within EX28DRAFT_3064 at 373.604 kb on + strand, within EX28DRAFT_3064 at 373.605 kb on - strand, within EX28DRAFT_3064 at 373.845 kb on + strand, within EX28DRAFT_3064 at 373.846 kb on - strand, within EX28DRAFT_3064 at 373.965 kb on - strand at 374.106 kb on + strand at 374.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 372,095 + -0.1 372,096 - -1.6 372,096 - -0.5 372,127 - -0.6 372,405 + EX28DRAFT_3063 0.37 -0.5 372,406 - EX28DRAFT_3063 0.37 -0.2 372,526 + EX28DRAFT_3063 0.50 +0.4 372,568 - EX28DRAFT_3063 0.54 +0.4 372,568 - EX28DRAFT_3063 0.54 -0.1 372,664 + EX28DRAFT_3063 0.65 +0.1 372,728 - EX28DRAFT_3063 0.71 -0.1 372,728 - EX28DRAFT_3063 0.71 +0.6 372,929 - -0.3 372,990 - -0.6 373,012 - +0.0 373,239 - EX28DRAFT_3064 0.22 -0.2 373,239 - EX28DRAFT_3064 0.22 +0.2 373,511 - EX28DRAFT_3064 0.48 -1.3 373,604 + EX28DRAFT_3064 0.57 -1.3 373,604 + EX28DRAFT_3064 0.57 -0.6 373,604 + EX28DRAFT_3064 0.57 -0.5 373,605 - EX28DRAFT_3064 0.57 -0.5 373,845 + EX28DRAFT_3064 0.80 +0.2 373,846 - EX28DRAFT_3064 0.80 +0.0 373,965 - +0.4 374,106 + +0.8 374,971 - -1.7
Or see this region's nucleotide sequence