Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3050

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3049 and EX28DRAFT_3050 are separated by 105 nucleotidesEX28DRAFT_3050 and EX28DRAFT_3051 are separated by 83 nucleotides EX28DRAFT_3049: EX28DRAFT_3049 - Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family, at 356,183 to 357,346 _3049 EX28DRAFT_3050: EX28DRAFT_3050 - Aldo/keto reductases, related to diketogulonate reductase, at 357,452 to 358,279 _3050 EX28DRAFT_3051: EX28DRAFT_3051 - uncharacterized radical SAM protein YgiQ, at 358,363 to 360,534 _3051 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 356.510 kb on + strand, within EX28DRAFT_3049at 356.563 kb on + strand, within EX28DRAFT_3049at 356.724 kb on - strand, within EX28DRAFT_3049at 356.776 kb on + strand, within EX28DRAFT_3049at 356.790 kb on - strand, within EX28DRAFT_3049at 356.790 kb on - strand, within EX28DRAFT_3049at 356.799 kb on - strand, within EX28DRAFT_3049at 356.913 kb on + strand, within EX28DRAFT_3049at 356.914 kb on - strand, within EX28DRAFT_3049at 356.914 kb on - strand, within EX28DRAFT_3049at 356.914 kb on - strand, within EX28DRAFT_3049at 356.914 kb on - strand, within EX28DRAFT_3049at 357.304 kb on + strandat 357.329 kb on + strandat 357.329 kb on + strandat 357.330 kb on - strandat 357.330 kb on - strandat 357.394 kb on + strandat 357.395 kb on - strandat 357.511 kb on - strandat 357.517 kb on - strandat 357.556 kb on + strand, within EX28DRAFT_3050at 357.663 kb on + strand, within EX28DRAFT_3050at 357.663 kb on + strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.797 kb on + strand, within EX28DRAFT_3050at 357.866 kb on - strand, within EX28DRAFT_3050at 357.866 kb on - strand, within EX28DRAFT_3050at 357.988 kb on + strand, within EX28DRAFT_3050at 357.989 kb on - strand, within EX28DRAFT_3050at 358.072 kb on + strand, within EX28DRAFT_3050at 358.072 kb on + strand, within EX28DRAFT_3050at 358.077 kb on - strand, within EX28DRAFT_3050at 358.077 kb on - strand, within EX28DRAFT_3050at 358.277 kb on + strandat 358.277 kb on + strandat 358.286 kb on - strandat 358.321 kb on + strandat 358.322 kb on - strandat 358.665 kb on + strand, within EX28DRAFT_3051at 358.666 kb on - strand, within EX28DRAFT_3051at 358.668 kb on - strand, within EX28DRAFT_3051at 358.700 kb on + strand, within EX28DRAFT_3051at 358.700 kb on + strand, within EX28DRAFT_3051at 358.700 kb on + strand, within EX28DRAFT_3051at 358.701 kb on - strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.704 kb on - strand, within EX28DRAFT_3051at 358.704 kb on - strand, within EX28DRAFT_3051at 358.736 kb on + strand, within EX28DRAFT_3051at 358.838 kb on + strand, within EX28DRAFT_3051at 358.839 kb on - strand, within EX28DRAFT_3051at 358.850 kb on + strand, within EX28DRAFT_3051at 358.850 kb on + strand, within EX28DRAFT_3051at 358.851 kb on - strand, within EX28DRAFT_3051at 358.851 kb on - strand, within EX28DRAFT_3051at 358.851 kb on - strand, within EX28DRAFT_3051at 358.877 kb on + strand, within EX28DRAFT_3051at 358.908 kb on - strand, within EX28DRAFT_3051at 359.043 kb on - strand, within EX28DRAFT_3051at 359.048 kb on - strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.217 kb on - strand, within EX28DRAFT_3051at 359.217 kb on - strand, within EX28DRAFT_3051at 359.217 kb on - strand, within EX28DRAFT_3051

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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356,510 + EX28DRAFT_3049 0.28 +0.4
356,563 + EX28DRAFT_3049 0.33 +1.2
356,724 - EX28DRAFT_3049 0.46 -0.2
356,776 + EX28DRAFT_3049 0.51 -0.1
356,790 - EX28DRAFT_3049 0.52 -0.8
356,790 - EX28DRAFT_3049 0.52 +0.2
356,799 - EX28DRAFT_3049 0.53 -1.0
356,913 + EX28DRAFT_3049 0.63 +0.3
356,914 - EX28DRAFT_3049 0.63 -0.3
356,914 - EX28DRAFT_3049 0.63 +0.1
356,914 - EX28DRAFT_3049 0.63 +0.1
356,914 - EX28DRAFT_3049 0.63 +0.0
357,304 + -1.1
357,329 + +0.1
357,329 + -0.1
357,330 - -0.7
357,330 - -0.0
357,394 + -1.5
357,395 - +0.5
357,511 - -0.1
357,517 - +0.1
357,556 + EX28DRAFT_3050 0.13 -0.2
357,663 + EX28DRAFT_3050 0.25 +0.4
357,663 + EX28DRAFT_3050 0.25 -0.0
357,664 - EX28DRAFT_3050 0.26 -1.0
357,664 - EX28DRAFT_3050 0.26 -0.8
357,664 - EX28DRAFT_3050 0.26 +0.2
357,797 + EX28DRAFT_3050 0.42 -0.0
357,866 - EX28DRAFT_3050 0.50 +0.0
357,866 - EX28DRAFT_3050 0.50 -0.0
357,988 + EX28DRAFT_3050 0.65 +0.0
357,989 - EX28DRAFT_3050 0.65 -0.9
358,072 + EX28DRAFT_3050 0.75 +0.1
358,072 + EX28DRAFT_3050 0.75 -0.4
358,077 - EX28DRAFT_3050 0.75 -1.1
358,077 - EX28DRAFT_3050 0.75 -0.7
358,277 + +0.0
358,277 + -0.2
358,286 - -0.0
358,321 + -0.1
358,322 - +0.2
358,665 + EX28DRAFT_3051 0.14 -0.7
358,666 - EX28DRAFT_3051 0.14 -0.2
358,668 - EX28DRAFT_3051 0.14 -0.2
358,700 + EX28DRAFT_3051 0.16 +0.2
358,700 + EX28DRAFT_3051 0.16 +0.2
358,700 + EX28DRAFT_3051 0.16 -0.2
358,701 - EX28DRAFT_3051 0.16 +2.1
358,703 + EX28DRAFT_3051 0.16 +0.9
358,703 + EX28DRAFT_3051 0.16 +0.6
358,703 + EX28DRAFT_3051 0.16 -0.3
358,703 + EX28DRAFT_3051 0.16 +0.2
358,703 + EX28DRAFT_3051 0.16 -0.0
358,704 - EX28DRAFT_3051 0.16 +0.2
358,704 - EX28DRAFT_3051 0.16 -0.5
358,736 + EX28DRAFT_3051 0.17 -0.4
358,838 + EX28DRAFT_3051 0.22 +0.1
358,839 - EX28DRAFT_3051 0.22 -0.1
358,850 + EX28DRAFT_3051 0.22 -0.0
358,850 + EX28DRAFT_3051 0.22 +0.2
358,851 - EX28DRAFT_3051 0.22 +0.1
358,851 - EX28DRAFT_3051 0.22 -1.0
358,851 - EX28DRAFT_3051 0.22 -0.1
358,877 + EX28DRAFT_3051 0.24 -0.3
358,908 - EX28DRAFT_3051 0.25 -1.8
359,043 - EX28DRAFT_3051 0.31 -0.7
359,048 - EX28DRAFT_3051 0.32 -0.0
359,216 + EX28DRAFT_3051 0.39 -0.3
359,216 + EX28DRAFT_3051 0.39 +0.3
359,216 + EX28DRAFT_3051 0.39 -2.4
359,216 + EX28DRAFT_3051 0.39 +0.6
359,216 + EX28DRAFT_3051 0.39 -0.2
359,216 + EX28DRAFT_3051 0.39 +0.2
359,216 + EX28DRAFT_3051 0.39 -0.1
359,216 + EX28DRAFT_3051 0.39 +0.0
359,216 + EX28DRAFT_3051 0.39 -0.7
359,216 + EX28DRAFT_3051 0.39 -0.6
359,217 - EX28DRAFT_3051 0.39 +0.2
359,217 - EX28DRAFT_3051 0.39 -0.0
359,217 - EX28DRAFT_3051 0.39 -0.7

Or see this region's nucleotide sequence