Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3044 and EX28DRAFT_3045 are separated by 4 nucleotides EX28DRAFT_3045 and EX28DRAFT_3046 are separated by 251 nucleotides EX28DRAFT_3046 and EX28DRAFT_3047 are separated by 143 nucleotides EX28DRAFT_3047 and EX28DRAFT_3048 are separated by 39 nucleotides
EX28DRAFT_3044: EX28DRAFT_3044 - TonB system transport protein ExbD, group 1, at 351,645 to 352,070
_3044
EX28DRAFT_3045: EX28DRAFT_3045 - tonB-system energizer ExbB, at 352,075 to 352,806
_3045
EX28DRAFT_3046: EX28DRAFT_3046 - cystathionine beta-lyase, bacterial, at 353,058 to 354,245
_3046
EX28DRAFT_3047: EX28DRAFT_3047 - Uncharacterized membrane-associated protein, at 354,389 to 355,048
_3047
EX28DRAFT_3048: EX28DRAFT_3048 - AraC-type DNA-binding domain-containing proteins, at 355,088 to 355,987
_3048
Position (kb) 353
354
355 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 352.071 kb on - strand at 352.071 kb on - strand at 352.093 kb on - strand at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.224 kb on - strand, within EX28DRAFT_3045 at 352.642 kb on - strand, within EX28DRAFT_3045 at 352.760 kb on + strand at 352.760 kb on + strand at 352.761 kb on - strand at 352.761 kb on - strand at 352.844 kb on + strand at 352.844 kb on + strand at 352.845 kb on - strand at 352.845 kb on - strand at 352.845 kb on - strand at 352.847 kb on + strand at 352.847 kb on + strand at 352.848 kb on - strand at 352.885 kb on + strand at 352.889 kb on - strand at 352.977 kb on + strand at 353.037 kb on - strand at 353.366 kb on + strand, within EX28DRAFT_3046 at 353.431 kb on + strand, within EX28DRAFT_3046 at 353.486 kb on + strand, within EX28DRAFT_3046 at 353.663 kb on + strand, within EX28DRAFT_3046 at 353.663 kb on + strand, within EX28DRAFT_3046 at 353.688 kb on + strand, within EX28DRAFT_3046 at 353.805 kb on + strand, within EX28DRAFT_3046 at 353.805 kb on + strand, within EX28DRAFT_3046 at 353.806 kb on - strand, within EX28DRAFT_3046 at 353.806 kb on - strand, within EX28DRAFT_3046 at 353.940 kb on - strand, within EX28DRAFT_3046 at 354.045 kb on - strand, within EX28DRAFT_3046 at 354.051 kb on - strand, within EX28DRAFT_3046 at 354.070 kb on - strand, within EX28DRAFT_3046 at 354.362 kb on + strand at 354.362 kb on + strand at 354.363 kb on - strand at 354.364 kb on + strand at 354.364 kb on + strand at 354.364 kb on + strand at 354.365 kb on - strand at 354.365 kb on - strand at 354.365 kb on - strand at 354.365 kb on - strand at 354.406 kb on + strand at 354.647 kb on + strand, within EX28DRAFT_3047 at 354.647 kb on + strand, within EX28DRAFT_3047 at 354.716 kb on + strand, within EX28DRAFT_3047 at 354.717 kb on - strand, within EX28DRAFT_3047 at 354.717 kb on - strand, within EX28DRAFT_3047 at 354.917 kb on - strand, within EX28DRAFT_3047 at 355.035 kb on - strand at 355.089 kb on + strand at 355.089 kb on + strand at 355.146 kb on + strand at 355.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 352,071 - +1.0 352,071 - +1.1 352,093 - -0.3 352,223 + EX28DRAFT_3045 0.20 +0.4 352,223 + EX28DRAFT_3045 0.20 +0.4 352,223 + EX28DRAFT_3045 0.20 -0.5 352,223 + EX28DRAFT_3045 0.20 -0.7 352,224 - EX28DRAFT_3045 0.20 -2.6 352,642 - EX28DRAFT_3045 0.77 -1.3 352,760 + +1.0 352,760 + +0.2 352,761 - -0.2 352,761 - +1.2 352,844 + -0.3 352,844 + -0.9 352,845 - +0.1 352,845 - +1.3 352,845 - +0.0 352,847 + -1.1 352,847 + +0.4 352,848 - -0.2 352,885 + +0.0 352,889 - +0.6 352,977 + -0.6 353,037 - -1.8 353,366 + EX28DRAFT_3046 0.26 -4.4 353,431 + EX28DRAFT_3046 0.31 -0.6 353,486 + EX28DRAFT_3046 0.36 -0.7 353,663 + EX28DRAFT_3046 0.51 -2.8 353,663 + EX28DRAFT_3046 0.51 -2.7 353,688 + EX28DRAFT_3046 0.53 -3.8 353,805 + EX28DRAFT_3046 0.63 -3.2 353,805 + EX28DRAFT_3046 0.63 -0.7 353,806 - EX28DRAFT_3046 0.63 -3.4 353,806 - EX28DRAFT_3046 0.63 -1.0 353,940 - EX28DRAFT_3046 0.74 -2.0 354,045 - EX28DRAFT_3046 0.83 -0.7 354,051 - EX28DRAFT_3046 0.84 -4.3 354,070 - EX28DRAFT_3046 0.85 -0.3 354,362 + +1.1 354,362 + -0.3 354,363 - -0.1 354,364 + -1.3 354,364 + -0.8 354,364 + -0.2 354,365 - -2.3 354,365 - +1.6 354,365 - -0.7 354,365 - -1.8 354,406 + -0.2 354,647 + EX28DRAFT_3047 0.39 -1.1 354,647 + EX28DRAFT_3047 0.39 +0.7 354,716 + EX28DRAFT_3047 0.50 -0.1 354,717 - EX28DRAFT_3047 0.50 +0.6 354,717 - EX28DRAFT_3047 0.50 +0.2 354,917 - EX28DRAFT_3047 0.80 -0.5 355,035 - +1.7 355,089 + +1.4 355,089 + +0.1 355,146 + -0.3 355,147 - +0.0
Or see this region's nucleotide sequence