Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3042 and EX28DRAFT_3043 are separated by 1 nucleotides EX28DRAFT_3043 and EX28DRAFT_3044 are separated by 42 nucleotides EX28DRAFT_3044 and EX28DRAFT_3045 are separated by 4 nucleotides EX28DRAFT_3045 and EX28DRAFT_3046 are separated by 251 nucleotides
EX28DRAFT_3042: EX28DRAFT_3042 - hypothetical protein, at 350,747 to 351,151
_3042
EX28DRAFT_3043: EX28DRAFT_3043 - hypothetical protein, at 351,153 to 351,602
_3043
EX28DRAFT_3044: EX28DRAFT_3044 - TonB system transport protein ExbD, group 1, at 351,645 to 352,070
_3044
EX28DRAFT_3045: EX28DRAFT_3045 - tonB-system energizer ExbB, at 352,075 to 352,806
_3045
EX28DRAFT_3046: EX28DRAFT_3046 - cystathionine beta-lyase, bacterial, at 353,058 to 354,245
_3046
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1 at 350.774 kb on - strand at 350.912 kb on - strand, within EX28DRAFT_3042 at 350.941 kb on - strand, within EX28DRAFT_3042 at 351.215 kb on + strand, within EX28DRAFT_3043 at 351.216 kb on - strand, within EX28DRAFT_3043 at 351.273 kb on - strand, within EX28DRAFT_3043 at 351.273 kb on - strand, within EX28DRAFT_3043 at 351.275 kb on + strand, within EX28DRAFT_3043 at 351.275 kb on + strand, within EX28DRAFT_3043 at 351.276 kb on - strand, within EX28DRAFT_3043 at 351.369 kb on + strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.395 kb on - strand, within EX28DRAFT_3043 at 351.447 kb on + strand, within EX28DRAFT_3043 at 351.447 kb on + strand, within EX28DRAFT_3043 at 351.518 kb on + strand, within EX28DRAFT_3043 at 351.718 kb on - strand, within EX28DRAFT_3044 at 351.791 kb on + strand, within EX28DRAFT_3044 at 351.792 kb on - strand, within EX28DRAFT_3044 at 351.877 kb on + strand, within EX28DRAFT_3044 at 351.878 kb on - strand, within EX28DRAFT_3044 at 351.882 kb on - strand, within EX28DRAFT_3044 at 351.882 kb on - strand, within EX28DRAFT_3044 at 352.071 kb on - strand at 352.071 kb on - strand at 352.093 kb on - strand at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.223 kb on + strand, within EX28DRAFT_3045 at 352.224 kb on - strand, within EX28DRAFT_3045 at 352.642 kb on - strand, within EX28DRAFT_3045 at 352.760 kb on + strand at 352.760 kb on + strand at 352.761 kb on - strand at 352.761 kb on - strand at 352.844 kb on + strand at 352.844 kb on + strand at 352.845 kb on - strand at 352.845 kb on - strand at 352.845 kb on - strand at 352.847 kb on + strand at 352.847 kb on + strand at 352.848 kb on - strand at 352.885 kb on + strand at 352.889 kb on - strand at 352.977 kb on + strand at 353.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 350,774 - -0.6 350,912 - EX28DRAFT_3042 0.41 +0.1 350,941 - EX28DRAFT_3042 0.48 -1.7 351,215 + EX28DRAFT_3043 0.14 -0.4 351,216 - EX28DRAFT_3043 0.14 +0.6 351,273 - EX28DRAFT_3043 0.27 -0.9 351,273 - EX28DRAFT_3043 0.27 -0.2 351,275 + EX28DRAFT_3043 0.27 -0.4 351,275 + EX28DRAFT_3043 0.27 +0.1 351,276 - EX28DRAFT_3043 0.27 +0.3 351,369 + EX28DRAFT_3043 0.48 -0.1 351,395 - EX28DRAFT_3043 0.54 -0.2 351,395 - EX28DRAFT_3043 0.54 -2.6 351,395 - EX28DRAFT_3043 0.54 +1.6 351,395 - EX28DRAFT_3043 0.54 -0.5 351,447 + EX28DRAFT_3043 0.65 +0.3 351,447 + EX28DRAFT_3043 0.65 +0.0 351,518 + EX28DRAFT_3043 0.81 -0.2 351,718 - EX28DRAFT_3044 0.17 -0.2 351,791 + EX28DRAFT_3044 0.34 +1.3 351,792 - EX28DRAFT_3044 0.35 +0.3 351,877 + EX28DRAFT_3044 0.54 +0.1 351,878 - EX28DRAFT_3044 0.55 +0.6 351,882 - EX28DRAFT_3044 0.56 +0.4 351,882 - EX28DRAFT_3044 0.56 +0.6 352,071 - +1.0 352,071 - +1.1 352,093 - -0.3 352,223 + EX28DRAFT_3045 0.20 +0.4 352,223 + EX28DRAFT_3045 0.20 +0.4 352,223 + EX28DRAFT_3045 0.20 -0.5 352,223 + EX28DRAFT_3045 0.20 -0.7 352,224 - EX28DRAFT_3045 0.20 -2.6 352,642 - EX28DRAFT_3045 0.77 -1.3 352,760 + +1.0 352,760 + +0.2 352,761 - -0.2 352,761 - +1.2 352,844 + -0.3 352,844 + -0.9 352,845 - +0.1 352,845 - +1.3 352,845 - +0.0 352,847 + -1.1 352,847 + +0.4 352,848 - -0.2 352,885 + +0.0 352,889 - +0.6 352,977 + -0.6 353,037 - -1.8
Or see this region's nucleotide sequence