Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3023 and EX28DRAFT_3024 overlap by 4 nucleotides EX28DRAFT_3024 and EX28DRAFT_3025 overlap by 8 nucleotides EX28DRAFT_3025 and EX28DRAFT_3026 are separated by 5 nucleotides
EX28DRAFT_3023: EX28DRAFT_3023 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 334,399 to 335,376
_3023
EX28DRAFT_3024: EX28DRAFT_3024 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 335,373 to 336,350
_3024
EX28DRAFT_3025: EX28DRAFT_3025 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 336,343 to 337,188
_3025
EX28DRAFT_3026: EX28DRAFT_3026 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 337,194 to 338,147
_3026
Position (kb) 336
337
338 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 335.437 kb on + strand at 335.602 kb on + strand, within EX28DRAFT_3024 at 335.665 kb on + strand, within EX28DRAFT_3024 at 335.666 kb on - strand, within EX28DRAFT_3024 at 336.197 kb on + strand, within EX28DRAFT_3024 at 336.336 kb on + strand at 336.336 kb on + strand at 336.339 kb on + strand at 336.339 kb on + strand at 336.339 kb on + strand at 336.339 kb on + strand at 336.340 kb on - strand at 336.340 kb on - strand at 336.470 kb on + strand, within EX28DRAFT_3025 at 336.470 kb on + strand, within EX28DRAFT_3025 at 336.470 kb on + strand, within EX28DRAFT_3025 at 336.470 kb on + strand, within EX28DRAFT_3025 at 336.471 kb on - strand, within EX28DRAFT_3025 at 336.487 kb on - strand, within EX28DRAFT_3025 at 336.677 kb on + strand, within EX28DRAFT_3025 at 336.678 kb on - strand, within EX28DRAFT_3025 at 336.678 kb on - strand, within EX28DRAFT_3025 at 336.751 kb on - strand, within EX28DRAFT_3025 at 336.785 kb on + strand, within EX28DRAFT_3025 at 336.786 kb on - strand, within EX28DRAFT_3025 at 336.966 kb on - strand, within EX28DRAFT_3025 at 337.111 kb on - strand at 337.231 kb on + strand at 337.295 kb on + strand, within EX28DRAFT_3026 at 337.378 kb on + strand, within EX28DRAFT_3026 at 337.379 kb on - strand, within EX28DRAFT_3026 at 337.379 kb on - strand, within EX28DRAFT_3026 at 337.421 kb on + strand, within EX28DRAFT_3026 at 337.547 kb on - strand, within EX28DRAFT_3026 at 337.555 kb on + strand, within EX28DRAFT_3026 at 337.587 kb on - strand, within EX28DRAFT_3026 at 337.738 kb on + strand, within EX28DRAFT_3026 at 337.738 kb on + strand, within EX28DRAFT_3026 at 337.738 kb on + strand, within EX28DRAFT_3026 at 337.739 kb on - strand, within EX28DRAFT_3026 at 337.746 kb on + strand, within EX28DRAFT_3026 at 337.746 kb on + strand, within EX28DRAFT_3026 at 337.778 kb on + strand, within EX28DRAFT_3026 at 337.778 kb on + strand, within EX28DRAFT_3026 at 337.778 kb on + strand, within EX28DRAFT_3026 at 337.779 kb on - strand, within EX28DRAFT_3026 at 337.955 kb on - strand, within EX28DRAFT_3026 at 338.030 kb on + strand, within EX28DRAFT_3026 at 338.031 kb on - strand, within EX28DRAFT_3026 at 338.035 kb on + strand, within EX28DRAFT_3026 at 338.036 kb on - strand, within EX28DRAFT_3026 at 338.093 kb on + strand at 338.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 335,437 + +0.7 335,602 + EX28DRAFT_3024 0.23 +0.8 335,665 + EX28DRAFT_3024 0.30 -0.6 335,666 - EX28DRAFT_3024 0.30 +0.0 336,197 + EX28DRAFT_3024 0.84 +0.0 336,336 + +0.4 336,336 + +0.1 336,339 + +0.3 336,339 + -0.8 336,339 + +0.2 336,339 + +0.4 336,340 - -1.2 336,340 - -0.3 336,470 + EX28DRAFT_3025 0.15 -0.6 336,470 + EX28DRAFT_3025 0.15 -0.1 336,470 + EX28DRAFT_3025 0.15 +0.3 336,470 + EX28DRAFT_3025 0.15 -1.4 336,471 - EX28DRAFT_3025 0.15 -0.2 336,487 - EX28DRAFT_3025 0.17 -0.2 336,677 + EX28DRAFT_3025 0.39 -0.3 336,678 - EX28DRAFT_3025 0.40 -0.1 336,678 - EX28DRAFT_3025 0.40 -0.5 336,751 - EX28DRAFT_3025 0.48 -0.2 336,785 + EX28DRAFT_3025 0.52 -0.1 336,786 - EX28DRAFT_3025 0.52 +0.2 336,966 - EX28DRAFT_3025 0.74 +0.2 337,111 - +0.6 337,231 + +0.3 337,295 + EX28DRAFT_3026 0.11 +0.3 337,378 + EX28DRAFT_3026 0.19 -0.9 337,379 - EX28DRAFT_3026 0.19 +1.5 337,379 - EX28DRAFT_3026 0.19 -0.1 337,421 + EX28DRAFT_3026 0.24 +0.1 337,547 - EX28DRAFT_3026 0.37 +2.4 337,555 + EX28DRAFT_3026 0.38 +0.0 337,587 - EX28DRAFT_3026 0.41 -4.6 337,738 + EX28DRAFT_3026 0.57 -0.3 337,738 + EX28DRAFT_3026 0.57 +0.2 337,738 + EX28DRAFT_3026 0.57 +0.0 337,739 - EX28DRAFT_3026 0.57 +0.0 337,746 + EX28DRAFT_3026 0.58 -0.6 337,746 + EX28DRAFT_3026 0.58 -0.3 337,778 + EX28DRAFT_3026 0.61 -0.9 337,778 + EX28DRAFT_3026 0.61 +0.4 337,778 + EX28DRAFT_3026 0.61 +0.0 337,779 - EX28DRAFT_3026 0.61 +0.3 337,955 - EX28DRAFT_3026 0.80 +0.3 338,030 + EX28DRAFT_3026 0.88 +1.1 338,031 - EX28DRAFT_3026 0.88 +0.1 338,035 + EX28DRAFT_3026 0.88 +0.5 338,036 - EX28DRAFT_3026 0.88 -0.4 338,093 + +0.4 338,094 - +0.7
Or see this region's nucleotide sequence