Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3015 and EX28DRAFT_3016 are separated by 94 nucleotides EX28DRAFT_3016 and EX28DRAFT_3017 are separated by 170 nucleotides EX28DRAFT_3017 and EX28DRAFT_3018 are separated by 622 nucleotides
EX28DRAFT_3015: EX28DRAFT_3015 - hypothetical protein, at 323,994 to 324,386
_3015
EX28DRAFT_3016: EX28DRAFT_3016 - Protein of unknown function (DUF1493), at 324,481 to 324,861
_3016
EX28DRAFT_3017: EX28DRAFT_3017 - Bacterial regulatory proteins, luxR family, at 325,032 to 325,610
_3017
EX28DRAFT_3018: EX28DRAFT_3018 - poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA, at 326,233 to 328,671
_3018
Position (kb) 325
326 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 324.089 kb on + strand, within EX28DRAFT_3015 at 324.089 kb on + strand, within EX28DRAFT_3015 at 324.174 kb on - strand, within EX28DRAFT_3015 at 324.174 kb on - strand, within EX28DRAFT_3015 at 324.174 kb on - strand, within EX28DRAFT_3015 at 324.182 kb on + strand, within EX28DRAFT_3015 at 324.259 kb on + strand, within EX28DRAFT_3015 at 324.259 kb on + strand, within EX28DRAFT_3015 at 324.376 kb on + strand at 324.377 kb on - strand at 324.381 kb on - strand at 324.402 kb on - strand at 324.438 kb on - strand at 324.454 kb on - strand at 324.509 kb on - strand at 324.526 kb on - strand, within EX28DRAFT_3016 at 324.528 kb on - strand, within EX28DRAFT_3016 at 324.528 kb on - strand, within EX28DRAFT_3016 at 324.585 kb on + strand, within EX28DRAFT_3016 at 324.585 kb on + strand, within EX28DRAFT_3016 at 324.585 kb on + strand, within EX28DRAFT_3016 at 324.585 kb on + strand, within EX28DRAFT_3016 at 324.585 kb on + strand, within EX28DRAFT_3016 at 324.586 kb on - strand, within EX28DRAFT_3016 at 324.586 kb on - strand, within EX28DRAFT_3016 at 324.612 kb on - strand, within EX28DRAFT_3016 at 324.674 kb on + strand, within EX28DRAFT_3016 at 324.674 kb on + strand, within EX28DRAFT_3016 at 324.755 kb on - strand, within EX28DRAFT_3016 at 324.805 kb on - strand, within EX28DRAFT_3016 at 324.836 kb on - strand at 324.857 kb on - strand at 324.857 kb on - strand at 324.901 kb on - strand at 324.901 kb on - strand at 324.941 kb on - strand at 324.990 kb on - strand at 325.009 kb on + strand at 325.009 kb on + strand at 325.009 kb on + strand at 325.010 kb on - strand at 325.010 kb on - strand at 325.236 kb on - strand, within EX28DRAFT_3017 at 325.248 kb on - strand, within EX28DRAFT_3017 at 325.303 kb on - strand, within EX28DRAFT_3017 at 325.344 kb on + strand, within EX28DRAFT_3017 at 325.344 kb on + strand, within EX28DRAFT_3017 at 325.345 kb on - strand, within EX28DRAFT_3017 at 325.352 kb on + strand, within EX28DRAFT_3017 at 325.438 kb on + strand, within EX28DRAFT_3017 at 325.438 kb on + strand, within EX28DRAFT_3017 at 325.445 kb on - strand, within EX28DRAFT_3017 at 325.446 kb on + strand, within EX28DRAFT_3017 at 325.506 kb on + strand, within EX28DRAFT_3017 at 325.506 kb on + strand, within EX28DRAFT_3017 at 326.488 kb on - strand, within EX28DRAFT_3018 at 326.515 kb on + strand, within EX28DRAFT_3018 at 326.515 kb on + strand, within EX28DRAFT_3018 at 326.518 kb on - strand, within EX28DRAFT_3018
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 324,089 + EX28DRAFT_3015 0.24 +0.3 324,089 + EX28DRAFT_3015 0.24 -1.0 324,174 - EX28DRAFT_3015 0.46 +0.5 324,174 - EX28DRAFT_3015 0.46 +0.4 324,174 - EX28DRAFT_3015 0.46 +0.0 324,182 + EX28DRAFT_3015 0.48 -1.2 324,259 + EX28DRAFT_3015 0.67 -0.4 324,259 + EX28DRAFT_3015 0.67 -0.1 324,376 + -0.2 324,377 - +0.5 324,381 - -0.3 324,402 - -0.3 324,438 - -0.1 324,454 - +0.0 324,509 - +0.3 324,526 - EX28DRAFT_3016 0.12 +0.1 324,528 - EX28DRAFT_3016 0.12 +0.5 324,528 - EX28DRAFT_3016 0.12 -0.1 324,585 + EX28DRAFT_3016 0.27 +1.9 324,585 + EX28DRAFT_3016 0.27 -0.1 324,585 + EX28DRAFT_3016 0.27 -0.6 324,585 + EX28DRAFT_3016 0.27 -0.3 324,585 + EX28DRAFT_3016 0.27 -2.4 324,586 - EX28DRAFT_3016 0.28 +0.7 324,586 - EX28DRAFT_3016 0.28 -0.2 324,612 - EX28DRAFT_3016 0.34 -1.3 324,674 + EX28DRAFT_3016 0.51 +0.7 324,674 + EX28DRAFT_3016 0.51 -0.5 324,755 - EX28DRAFT_3016 0.72 +3.4 324,805 - EX28DRAFT_3016 0.85 -0.2 324,836 - -0.3 324,857 - +0.7 324,857 - +0.1 324,901 - +0.1 324,901 - +0.8 324,941 - +0.2 324,990 - +0.3 325,009 + +1.5 325,009 + +0.7 325,009 + +0.4 325,010 - +0.1 325,010 - -0.6 325,236 - EX28DRAFT_3017 0.35 +0.1 325,248 - EX28DRAFT_3017 0.37 -0.1 325,303 - EX28DRAFT_3017 0.47 +0.1 325,344 + EX28DRAFT_3017 0.54 +0.2 325,344 + EX28DRAFT_3017 0.54 -0.1 325,345 - EX28DRAFT_3017 0.54 -0.0 325,352 + EX28DRAFT_3017 0.55 -0.8 325,438 + EX28DRAFT_3017 0.70 -1.7 325,438 + EX28DRAFT_3017 0.70 +0.2 325,445 - EX28DRAFT_3017 0.71 +0.2 325,446 + EX28DRAFT_3017 0.72 -0.3 325,506 + EX28DRAFT_3017 0.82 -1.1 325,506 + EX28DRAFT_3017 0.82 -0.8 326,488 - EX28DRAFT_3018 0.10 +1.1 326,515 + EX28DRAFT_3018 0.12 -0.2 326,515 + EX28DRAFT_3018 0.12 -0.7 326,518 - EX28DRAFT_3018 0.12 +0.1
Or see this region's nucleotide sequence