Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3013

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3012 and EX28DRAFT_3013 are separated by 181 nucleotidesEX28DRAFT_3013 and EX28DRAFT_3014 are separated by 95 nucleotidesEX28DRAFT_3014 and EX28DRAFT_3015 are separated by 139 nucleotidesEX28DRAFT_3015 and EX28DRAFT_3016 are separated by 94 nucleotides EX28DRAFT_3012: EX28DRAFT_3012 - Arginine/lysine/ornithine decarboxylases, at 320,650 to 322,785 _3012 EX28DRAFT_3013: EX28DRAFT_3013 - Uncharacterized membrane protein, possible Na+ channel or pump, at 322,967 to 323,683 _3013 EX28DRAFT_3014: EX28DRAFT_3014 - tRNA, at 323,779 to 323,854 _3014 EX28DRAFT_3015: EX28DRAFT_3015 - hypothetical protein, at 323,994 to 324,386 _3015 EX28DRAFT_3016: EX28DRAFT_3016 - Protein of unknown function (DUF1493), at 324,481 to 324,861 _3016 Position (kb) 322 323 324Strain fitness (log2 ratio) -2 -1 0 1 2at 322.057 kb on - strand, within EX28DRAFT_3012at 322.089 kb on - strand, within EX28DRAFT_3012at 322.232 kb on + strand, within EX28DRAFT_3012at 322.233 kb on - strand, within EX28DRAFT_3012at 322.233 kb on - strand, within EX28DRAFT_3012at 322.371 kb on - strand, within EX28DRAFT_3012at 322.371 kb on - strand, within EX28DRAFT_3012at 322.576 kb on + strandat 322.602 kb on + strandat 322.603 kb on - strandat 322.603 kb on - strandat 322.840 kb on - strandat 322.852 kb on + strandat 322.853 kb on - strandat 322.853 kb on - strandat 322.930 kb on + strandat 322.938 kb on + strandat 322.938 kb on + strandat 322.953 kb on - strandat 322.984 kb on + strandat 322.984 kb on + strandat 322.985 kb on - strandat 323.104 kb on + strand, within EX28DRAFT_3013at 323.112 kb on + strand, within EX28DRAFT_3013at 323.203 kb on + strand, within EX28DRAFT_3013at 323.204 kb on - strand, within EX28DRAFT_3013at 323.204 kb on - strand, within EX28DRAFT_3013at 323.281 kb on + strand, within EX28DRAFT_3013at 323.291 kb on + strand, within EX28DRAFT_3013at 323.599 kb on + strand, within EX28DRAFT_3013at 323.891 kb on + strandat 323.891 kb on + strandat 323.893 kb on + strandat 323.950 kb on - strandat 323.970 kb on + strandat 323.970 kb on + strandat 323.970 kb on + strandat 323.970 kb on + strandat 324.000 kb on - strandat 324.000 kb on - strandat 324.000 kb on - strandat 324.089 kb on + strand, within EX28DRAFT_3015at 324.089 kb on + strand, within EX28DRAFT_3015at 324.174 kb on - strand, within EX28DRAFT_3015at 324.174 kb on - strand, within EX28DRAFT_3015at 324.174 kb on - strand, within EX28DRAFT_3015at 324.182 kb on + strand, within EX28DRAFT_3015at 324.259 kb on + strand, within EX28DRAFT_3015at 324.259 kb on + strand, within EX28DRAFT_3015at 324.376 kb on + strandat 324.377 kb on - strandat 324.381 kb on - strandat 324.402 kb on - strandat 324.438 kb on - strandat 324.454 kb on - strandat 324.509 kb on - strandat 324.526 kb on - strand, within EX28DRAFT_3016at 324.528 kb on - strand, within EX28DRAFT_3016at 324.528 kb on - strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.585 kb on + strand, within EX28DRAFT_3016at 324.586 kb on - strand, within EX28DRAFT_3016at 324.586 kb on - strand, within EX28DRAFT_3016at 324.612 kb on - strand, within EX28DRAFT_3016at 324.674 kb on + strand, within EX28DRAFT_3016at 324.674 kb on + strand, within EX28DRAFT_3016

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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322,057 - EX28DRAFT_3012 0.66 +1.0
322,089 - EX28DRAFT_3012 0.67 -0.1
322,232 + EX28DRAFT_3012 0.74 -0.4
322,233 - EX28DRAFT_3012 0.74 -0.4
322,233 - EX28DRAFT_3012 0.74 -0.4
322,371 - EX28DRAFT_3012 0.81 +0.4
322,371 - EX28DRAFT_3012 0.81 +0.1
322,576 + -1.6
322,602 + +0.0
322,603 - +0.5
322,603 - +0.6
322,840 - -0.9
322,852 + +0.1
322,853 - +0.4
322,853 - +0.1
322,930 + -0.2
322,938 + -0.6
322,938 + -0.4
322,953 - -0.2
322,984 + -0.4
322,984 + +0.4
322,985 - -0.1
323,104 + EX28DRAFT_3013 0.19 +0.5
323,112 + EX28DRAFT_3013 0.20 -0.5
323,203 + EX28DRAFT_3013 0.33 +0.7
323,204 - EX28DRAFT_3013 0.33 -0.1
323,204 - EX28DRAFT_3013 0.33 -1.2
323,281 + EX28DRAFT_3013 0.44 -0.3
323,291 + EX28DRAFT_3013 0.45 -0.0
323,599 + EX28DRAFT_3013 0.88 -0.8
323,891 + +0.3
323,891 + +1.6
323,893 + -0.0
323,950 - -0.3
323,970 + +0.2
323,970 + +1.5
323,970 + +0.0
323,970 + -0.0
324,000 - +0.1
324,000 - -0.1
324,000 - +0.2
324,089 + EX28DRAFT_3015 0.24 +0.3
324,089 + EX28DRAFT_3015 0.24 -1.0
324,174 - EX28DRAFT_3015 0.46 +0.5
324,174 - EX28DRAFT_3015 0.46 +0.4
324,174 - EX28DRAFT_3015 0.46 +0.0
324,182 + EX28DRAFT_3015 0.48 -1.2
324,259 + EX28DRAFT_3015 0.67 -0.4
324,259 + EX28DRAFT_3015 0.67 -0.1
324,376 + -0.2
324,377 - +0.5
324,381 - -0.3
324,402 - -0.3
324,438 - -0.1
324,454 - +0.0
324,509 - +0.3
324,526 - EX28DRAFT_3016 0.12 +0.1
324,528 - EX28DRAFT_3016 0.12 +0.5
324,528 - EX28DRAFT_3016 0.12 -0.1
324,585 + EX28DRAFT_3016 0.27 +1.9
324,585 + EX28DRAFT_3016 0.27 -0.1
324,585 + EX28DRAFT_3016 0.27 -0.6
324,585 + EX28DRAFT_3016 0.27 -0.3
324,585 + EX28DRAFT_3016 0.27 -2.4
324,586 - EX28DRAFT_3016 0.28 +0.7
324,586 - EX28DRAFT_3016 0.28 -0.2
324,612 - EX28DRAFT_3016 0.34 -1.3
324,674 + EX28DRAFT_3016 0.51 +0.7
324,674 + EX28DRAFT_3016 0.51 -0.5

Or see this region's nucleotide sequence