Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3012

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3010 and EX28DRAFT_3011 overlap by 11 nucleotidesEX28DRAFT_3011 and EX28DRAFT_3012 are separated by 54 nucleotidesEX28DRAFT_3012 and EX28DRAFT_3013 are separated by 181 nucleotidesEX28DRAFT_3013 and EX28DRAFT_3014 are separated by 95 nucleotides EX28DRAFT_3010: EX28DRAFT_3010 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 318,288 to 319,913 _3010 EX28DRAFT_3011: EX28DRAFT_3011 - Response regulator of citrate/malate metabolism, at 319,903 to 320,595 _3011 EX28DRAFT_3012: EX28DRAFT_3012 - Arginine/lysine/ornithine decarboxylases, at 320,650 to 322,785 _3012 EX28DRAFT_3013: EX28DRAFT_3013 - Uncharacterized membrane protein, possible Na+ channel or pump, at 322,967 to 323,683 _3013 EX28DRAFT_3014: EX28DRAFT_3014 - tRNA, at 323,779 to 323,854 _3014 Position (kb) 320 321 322 323Strain fitness (log2 ratio) -3 -2 -1 0 1at 319.667 kb on + strand, within EX28DRAFT_3010at 319.789 kb on - strandat 319.860 kb on - strandat 320.076 kb on + strand, within EX28DRAFT_3011at 320.100 kb on + strand, within EX28DRAFT_3011at 320.154 kb on + strand, within EX28DRAFT_3011at 320.155 kb on - strand, within EX28DRAFT_3011at 320.157 kb on + strand, within EX28DRAFT_3011at 320.215 kb on + strand, within EX28DRAFT_3011at 320.354 kb on - strand, within EX28DRAFT_3011at 320.392 kb on - strand, within EX28DRAFT_3011at 320.575 kb on + strandat 320.575 kb on + strandat 320.575 kb on + strandat 320.575 kb on + strandat 320.576 kb on - strandat 320.576 kb on - strandat 320.576 kb on - strandat 320.651 kb on + strandat 320.651 kb on + strandat 320.651 kb on + strandat 320.656 kb on + strandat 320.656 kb on + strandat 320.656 kb on + strandat 320.656 kb on + strandat 320.656 kb on + strandat 320.659 kb on + strandat 320.659 kb on + strandat 320.659 kb on + strandat 320.659 kb on + strandat 320.659 kb on + strandat 320.659 kb on + strandat 320.660 kb on - strandat 320.660 kb on - strandat 320.660 kb on - strandat 320.663 kb on + strandat 320.663 kb on + strandat 320.664 kb on - strandat 320.771 kb on + strandat 320.772 kb on - strandat 320.905 kb on - strand, within EX28DRAFT_3012at 320.907 kb on - strand, within EX28DRAFT_3012at 320.907 kb on - strand, within EX28DRAFT_3012at 320.907 kb on - strand, within EX28DRAFT_3012at 320.907 kb on - strand, within EX28DRAFT_3012at 321.003 kb on - strand, within EX28DRAFT_3012at 321.041 kb on + strand, within EX28DRAFT_3012at 321.042 kb on - strand, within EX28DRAFT_3012at 321.114 kb on + strand, within EX28DRAFT_3012at 321.114 kb on + strand, within EX28DRAFT_3012at 321.114 kb on + strand, within EX28DRAFT_3012at 321.114 kb on + strand, within EX28DRAFT_3012at 321.114 kb on + strand, within EX28DRAFT_3012at 321.345 kb on - strand, within EX28DRAFT_3012at 321.360 kb on - strand, within EX28DRAFT_3012at 321.642 kb on + strand, within EX28DRAFT_3012at 321.643 kb on - strand, within EX28DRAFT_3012at 321.643 kb on - strand, within EX28DRAFT_3012at 321.825 kb on + strand, within EX28DRAFT_3012at 321.826 kb on - strand, within EX28DRAFT_3012at 321.872 kb on + strand, within EX28DRAFT_3012at 321.872 kb on + strand, within EX28DRAFT_3012at 321.872 kb on + strand, within EX28DRAFT_3012at 321.873 kb on - strand, within EX28DRAFT_3012at 321.917 kb on + strand, within EX28DRAFT_3012at 321.933 kb on - strand, within EX28DRAFT_3012at 322.057 kb on - strand, within EX28DRAFT_3012at 322.089 kb on - strand, within EX28DRAFT_3012at 322.232 kb on + strand, within EX28DRAFT_3012at 322.233 kb on - strand, within EX28DRAFT_3012at 322.233 kb on - strand, within EX28DRAFT_3012at 322.371 kb on - strand, within EX28DRAFT_3012at 322.371 kb on - strand, within EX28DRAFT_3012at 322.576 kb on + strandat 322.602 kb on + strandat 322.603 kb on - strandat 322.603 kb on - strandat 322.840 kb on - strandat 322.852 kb on + strandat 322.853 kb on - strandat 322.853 kb on - strandat 322.930 kb on + strandat 322.938 kb on + strandat 322.938 kb on + strandat 322.953 kb on - strandat 322.984 kb on + strandat 322.984 kb on + strandat 322.985 kb on - strandat 323.104 kb on + strand, within EX28DRAFT_3013at 323.112 kb on + strand, within EX28DRAFT_3013at 323.203 kb on + strand, within EX28DRAFT_3013at 323.204 kb on - strand, within EX28DRAFT_3013at 323.204 kb on - strand, within EX28DRAFT_3013at 323.281 kb on + strand, within EX28DRAFT_3013at 323.291 kb on + strand, within EX28DRAFT_3013at 323.599 kb on + strand, within EX28DRAFT_3013

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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319,667 + EX28DRAFT_3010 0.85 -0.9
319,789 - -0.1
319,860 - -2.9
320,076 + EX28DRAFT_3011 0.25 +0.3
320,100 + EX28DRAFT_3011 0.28 -0.4
320,154 + EX28DRAFT_3011 0.36 -1.2
320,155 - EX28DRAFT_3011 0.36 -0.3
320,157 + EX28DRAFT_3011 0.37 +0.1
320,215 + EX28DRAFT_3011 0.45 -0.2
320,354 - EX28DRAFT_3011 0.65 -0.0
320,392 - EX28DRAFT_3011 0.71 -0.5
320,575 + -0.3
320,575 + +0.5
320,575 + -2.0
320,575 + +0.3
320,576 - -1.2
320,576 - -0.1
320,576 - +0.1
320,651 + +0.2
320,651 + -0.6
320,651 + +0.1
320,656 + -0.7
320,656 + -0.2
320,656 + +1.5
320,656 + +0.2
320,656 + -0.3
320,659 + -0.4
320,659 + +0.3
320,659 + -0.4
320,659 + -0.9
320,659 + -1.0
320,659 + -1.1
320,660 - -2.0
320,660 - +0.3
320,660 - -0.5
320,663 + +1.3
320,663 + -0.5
320,664 - -0.0
320,771 + +0.5
320,772 - -0.1
320,905 - EX28DRAFT_3012 0.12 -0.4
320,907 - EX28DRAFT_3012 0.12 +0.2
320,907 - EX28DRAFT_3012 0.12 -0.3
320,907 - EX28DRAFT_3012 0.12 -0.8
320,907 - EX28DRAFT_3012 0.12 +0.0
321,003 - EX28DRAFT_3012 0.17 +0.3
321,041 + EX28DRAFT_3012 0.18 -0.4
321,042 - EX28DRAFT_3012 0.18 -1.9
321,114 + EX28DRAFT_3012 0.22 +0.1
321,114 + EX28DRAFT_3012 0.22 +0.3
321,114 + EX28DRAFT_3012 0.22 -0.0
321,114 + EX28DRAFT_3012 0.22 +0.2
321,114 + EX28DRAFT_3012 0.22 -0.7
321,345 - EX28DRAFT_3012 0.33 -1.5
321,360 - EX28DRAFT_3012 0.33 -0.1
321,642 + EX28DRAFT_3012 0.46 -0.2
321,643 - EX28DRAFT_3012 0.46 -0.7
321,643 - EX28DRAFT_3012 0.46 +0.1
321,825 + EX28DRAFT_3012 0.55 +0.1
321,826 - EX28DRAFT_3012 0.55 +0.5
321,872 + EX28DRAFT_3012 0.57 +0.4
321,872 + EX28DRAFT_3012 0.57 -1.5
321,872 + EX28DRAFT_3012 0.57 -0.2
321,873 - EX28DRAFT_3012 0.57 +0.1
321,917 + EX28DRAFT_3012 0.59 +0.2
321,933 - EX28DRAFT_3012 0.60 +0.4
322,057 - EX28DRAFT_3012 0.66 +1.0
322,089 - EX28DRAFT_3012 0.67 -0.1
322,232 + EX28DRAFT_3012 0.74 -0.4
322,233 - EX28DRAFT_3012 0.74 -0.4
322,233 - EX28DRAFT_3012 0.74 -0.4
322,371 - EX28DRAFT_3012 0.81 +0.4
322,371 - EX28DRAFT_3012 0.81 +0.1
322,576 + -1.6
322,602 + +0.0
322,603 - +0.5
322,603 - +0.6
322,840 - -0.9
322,852 + +0.1
322,853 - +0.4
322,853 - +0.1
322,930 + -0.2
322,938 + -0.6
322,938 + -0.4
322,953 - -0.2
322,984 + -0.4
322,984 + +0.4
322,985 - -0.1
323,104 + EX28DRAFT_3013 0.19 +0.5
323,112 + EX28DRAFT_3013 0.20 -0.5
323,203 + EX28DRAFT_3013 0.33 +0.7
323,204 - EX28DRAFT_3013 0.33 -0.1
323,204 - EX28DRAFT_3013 0.33 -1.2
323,281 + EX28DRAFT_3013 0.44 -0.3
323,291 + EX28DRAFT_3013 0.45 -0.0
323,599 + EX28DRAFT_3013 0.88 -0.8

Or see this region's nucleotide sequence