Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2998

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2996 and EX28DRAFT_2997 overlap by 1 nucleotidesEX28DRAFT_2997 and EX28DRAFT_2998 are separated by 138 nucleotidesEX28DRAFT_2998 and EX28DRAFT_2999 are separated by 26 nucleotidesEX28DRAFT_2999 and EX28DRAFT_3000 are separated by 53 nucleotides EX28DRAFT_2996: EX28DRAFT_2996 - Uncharacterized protein conserved in bacteria, at 305,384 to 305,710 _2996 EX28DRAFT_2997: EX28DRAFT_2997 - tRNA (guanine-N(7)-)-methyltransferase, at 305,710 to 306,429 _2997 EX28DRAFT_2998: EX28DRAFT_2998 - A/G-specific DNA-adenine glycosylase (EC 3.2.2.-), at 306,568 to 307,626 _2998 EX28DRAFT_2999: EX28DRAFT_2999 - Fe-S cluster protector protein, at 307,653 to 307,925 _2999 EX28DRAFT_3000: EX28DRAFT_3000 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 307,979 to 309,058 _3000 Position (kb) 306 307 308Strain fitness (log2 ratio) -2 -1 0 1 2at 305.606 kb on + strand, within EX28DRAFT_2996at 305.606 kb on + strand, within EX28DRAFT_2996at 305.607 kb on - strand, within EX28DRAFT_2996at 305.712 kb on - strandat 305.731 kb on + strandat 305.731 kb on + strandat 305.810 kb on + strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.811 kb on - strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.868 kb on + strand, within EX28DRAFT_2997at 305.869 kb on - strand, within EX28DRAFT_2997at 305.869 kb on - strand, within EX28DRAFT_2997at 305.879 kb on + strand, within EX28DRAFT_2997at 305.902 kb on - strand, within EX28DRAFT_2997at 305.929 kb on - strand, within EX28DRAFT_2997at 305.973 kb on + strand, within EX28DRAFT_2997at 305.977 kb on - strand, within EX28DRAFT_2997at 305.977 kb on - strand, within EX28DRAFT_2997at 306.048 kb on + strand, within EX28DRAFT_2997at 306.492 kb on - strandat 306.492 kb on - strandat 306.492 kb on - strandat 306.517 kb on + strandat 306.557 kb on + strandat 306.622 kb on + strandat 306.622 kb on + strandat 306.623 kb on - strandat 306.630 kb on + strandat 306.671 kb on + strandat 306.671 kb on + strandat 306.672 kb on - strandat 307.074 kb on - strand, within EX28DRAFT_2998at 307.074 kb on - strand, within EX28DRAFT_2998at 307.074 kb on - strand, within EX28DRAFT_2998at 307.275 kb on + strand, within EX28DRAFT_2998at 307.275 kb on + strand, within EX28DRAFT_2998at 307.275 kb on + strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.276 kb on - strand, within EX28DRAFT_2998at 307.346 kb on + strand, within EX28DRAFT_2998at 307.346 kb on + strand, within EX28DRAFT_2998at 307.346 kb on + strand, within EX28DRAFT_2998at 307.347 kb on - strand, within EX28DRAFT_2998at 307.347 kb on - strand, within EX28DRAFT_2998at 307.348 kb on + strand, within EX28DRAFT_2998at 307.540 kb on + strandat 307.542 kb on + strandat 307.543 kb on - strandat 307.547 kb on + strandat 307.604 kb on + strandat 307.604 kb on + strandat 307.605 kb on - strandat 307.605 kb on - strandat 307.673 kb on + strandat 307.743 kb on + strand, within EX28DRAFT_2999at 307.743 kb on + strand, within EX28DRAFT_2999at 307.905 kb on + strandat 307.906 kb on - strandat 307.908 kb on - strandat 307.908 kb on - strandat 307.908 kb on - strandat 307.924 kb on - strandat 307.952 kb on - strandat 308.128 kb on + strand, within EX28DRAFT_3000at 308.128 kb on + strand, within EX28DRAFT_3000at 308.129 kb on - strand, within EX28DRAFT_3000at 308.129 kb on - strand, within EX28DRAFT_3000at 308.129 kb on - strand, within EX28DRAFT_3000at 308.129 kb on - strand, within EX28DRAFT_3000at 308.129 kb on - strand, within EX28DRAFT_3000at 308.130 kb on + strand, within EX28DRAFT_3000at 308.130 kb on + strand, within EX28DRAFT_3000at 308.164 kb on + strand, within EX28DRAFT_3000at 308.171 kb on + strand, within EX28DRAFT_3000at 308.171 kb on + strand, within EX28DRAFT_3000at 308.171 kb on + strand, within EX28DRAFT_3000at 308.172 kb on - strand, within EX28DRAFT_3000at 308.176 kb on + strand, within EX28DRAFT_3000at 308.180 kb on + strand, within EX28DRAFT_3000at 308.181 kb on - strand, within EX28DRAFT_3000at 308.181 kb on - strand, within EX28DRAFT_3000at 308.228 kb on - strand, within EX28DRAFT_3000at 308.324 kb on - strand, within EX28DRAFT_3000at 308.333 kb on + strand, within EX28DRAFT_3000at 308.334 kb on - strand, within EX28DRAFT_3000at 308.447 kb on + strand, within EX28DRAFT_3000at 308.494 kb on + strand, within EX28DRAFT_3000at 308.548 kb on + strand, within EX28DRAFT_3000at 308.548 kb on + strand, within EX28DRAFT_3000at 308.549 kb on - strand, within EX28DRAFT_3000at 308.552 kb on + strand, within EX28DRAFT_3000at 308.553 kb on - strand, within EX28DRAFT_3000at 308.585 kb on + strand, within EX28DRAFT_3000at 308.586 kb on - strand, within EX28DRAFT_3000at 308.617 kb on + strand, within EX28DRAFT_3000

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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305,606 + EX28DRAFT_2996 0.68 -0.1
305,606 + EX28DRAFT_2996 0.68 -1.6
305,607 - EX28DRAFT_2996 0.68 -0.1
305,712 - -1.1
305,731 + -0.0
305,731 + +0.0
305,810 + EX28DRAFT_2997 0.14 -0.4
305,811 - EX28DRAFT_2997 0.14 +0.1
305,811 - EX28DRAFT_2997 0.14 -0.5
305,811 - EX28DRAFT_2997 0.14 -0.8
305,868 + EX28DRAFT_2997 0.22 +0.3
305,868 + EX28DRAFT_2997 0.22 -1.8
305,868 + EX28DRAFT_2997 0.22 +0.6
305,868 + EX28DRAFT_2997 0.22 +0.2
305,869 - EX28DRAFT_2997 0.22 -1.3
305,869 - EX28DRAFT_2997 0.22 +0.3
305,879 + EX28DRAFT_2997 0.23 +0.4
305,902 - EX28DRAFT_2997 0.27 -0.0
305,929 - EX28DRAFT_2997 0.30 -0.0
305,973 + EX28DRAFT_2997 0.37 +0.3
305,977 - EX28DRAFT_2997 0.37 -0.6
305,977 - EX28DRAFT_2997 0.37 -0.3
306,048 + EX28DRAFT_2997 0.47 +0.0
306,492 - -0.2
306,492 - +0.6
306,492 - +0.9
306,517 + +0.1
306,557 + +0.7
306,622 + +0.2
306,622 + -0.3
306,623 - -0.3
306,630 + -0.5
306,671 + -1.1
306,671 + -0.0
306,672 - -0.3
307,074 - EX28DRAFT_2998 0.48 +0.5
307,074 - EX28DRAFT_2998 0.48 -1.4
307,074 - EX28DRAFT_2998 0.48 -1.1
307,275 + EX28DRAFT_2998 0.67 -1.6
307,275 + EX28DRAFT_2998 0.67 -0.2
307,275 + EX28DRAFT_2998 0.67 -0.4
307,276 - EX28DRAFT_2998 0.67 +0.2
307,276 - EX28DRAFT_2998 0.67 +1.8
307,276 - EX28DRAFT_2998 0.67 -0.9
307,276 - EX28DRAFT_2998 0.67 -0.4
307,276 - EX28DRAFT_2998 0.67 +0.5
307,346 + EX28DRAFT_2998 0.73 -0.4
307,346 + EX28DRAFT_2998 0.73 +0.3
307,346 + EX28DRAFT_2998 0.73 -0.1
307,347 - EX28DRAFT_2998 0.74 -0.5
307,347 - EX28DRAFT_2998 0.74 -0.0
307,348 + EX28DRAFT_2998 0.74 -0.5
307,540 + +0.1
307,542 + -0.8
307,543 - -0.4
307,547 + -0.3
307,604 + -0.6
307,604 + +1.3
307,605 - -0.0
307,605 - -0.2
307,673 + -2.7
307,743 + EX28DRAFT_2999 0.33 -2.1
307,743 + EX28DRAFT_2999 0.33 -1.5
307,905 + +0.0
307,906 - -0.2
307,908 - -2.3
307,908 - -0.8
307,908 - -1.4
307,924 - +0.0
307,952 - -1.0
308,128 + EX28DRAFT_3000 0.14 -0.0
308,128 + EX28DRAFT_3000 0.14 -0.2
308,129 - EX28DRAFT_3000 0.14 +0.8
308,129 - EX28DRAFT_3000 0.14 -1.0
308,129 - EX28DRAFT_3000 0.14 -0.0
308,129 - EX28DRAFT_3000 0.14 +0.2
308,129 - EX28DRAFT_3000 0.14 -0.0
308,130 + EX28DRAFT_3000 0.14 -0.7
308,130 + EX28DRAFT_3000 0.14 -0.8
308,164 + EX28DRAFT_3000 0.17 +0.1
308,171 + EX28DRAFT_3000 0.18 -0.8
308,171 + EX28DRAFT_3000 0.18 -0.4
308,171 + EX28DRAFT_3000 0.18 +0.1
308,172 - EX28DRAFT_3000 0.18 -0.1
308,176 + EX28DRAFT_3000 0.18 +0.2
308,180 + EX28DRAFT_3000 0.19 -0.9
308,181 - EX28DRAFT_3000 0.19 +0.5
308,181 - EX28DRAFT_3000 0.19 -0.9
308,228 - EX28DRAFT_3000 0.23 +0.5
308,324 - EX28DRAFT_3000 0.32 +0.3
308,333 + EX28DRAFT_3000 0.33 -0.7
308,334 - EX28DRAFT_3000 0.33 -0.1
308,447 + EX28DRAFT_3000 0.43 -0.9
308,494 + EX28DRAFT_3000 0.48 +0.4
308,548 + EX28DRAFT_3000 0.53 +0.2
308,548 + EX28DRAFT_3000 0.53 +0.0
308,549 - EX28DRAFT_3000 0.53 -0.4
308,552 + EX28DRAFT_3000 0.53 -1.6
308,553 - EX28DRAFT_3000 0.53 -1.1
308,585 + EX28DRAFT_3000 0.56 -0.2
308,586 - EX28DRAFT_3000 0.56 +0.6
308,617 + EX28DRAFT_3000 0.59 +1.0

Or see this region's nucleotide sequence