Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2983

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2981 and EX28DRAFT_2982 are separated by 58 nucleotidesEX28DRAFT_2982 and EX28DRAFT_2983 are separated by 94 nucleotidesEX28DRAFT_2983 and EX28DRAFT_2984 are separated by 51 nucleotidesEX28DRAFT_2984 and EX28DRAFT_2985 are separated by 19 nucleotides EX28DRAFT_2981: EX28DRAFT_2981 - MFS transporter, sugar porter (SP) family, at 294,234 to 295,631 _2981 EX28DRAFT_2982: EX28DRAFT_2982 - Uncharacterized protein conserved in bacteria, at 295,690 to 296,187 _2982 EX28DRAFT_2983: EX28DRAFT_2983 - Endonuclease I, at 296,282 to 296,989 _2983 EX28DRAFT_2984: EX28DRAFT_2984 - RNA methyltransferase, RsmE family, at 297,041 to 297,772 _2984 EX28DRAFT_2985: EX28DRAFT_2985 - glutathione synthase (EC 6.3.2.3), at 297,792 to 298,739 _2985 Position (kb) 296 297Strain fitness (log2 ratio) -2 -1 0 1 2at 295.291 kb on + strand, within EX28DRAFT_2981at 295.295 kb on + strand, within EX28DRAFT_2981at 295.295 kb on + strand, within EX28DRAFT_2981at 295.296 kb on - strand, within EX28DRAFT_2981at 295.310 kb on + strand, within EX28DRAFT_2981at 295.467 kb on - strand, within EX28DRAFT_2981at 295.497 kb on + strandat 295.574 kb on + strandat 295.574 kb on + strandat 295.574 kb on + strandat 295.574 kb on + strandat 295.575 kb on - strandat 295.575 kb on - strandat 295.583 kb on + strandat 295.676 kb on + strandat 295.786 kb on + strand, within EX28DRAFT_2982at 295.798 kb on - strand, within EX28DRAFT_2982at 295.798 kb on - strand, within EX28DRAFT_2982at 295.852 kb on + strand, within EX28DRAFT_2982at 296.029 kb on - strand, within EX28DRAFT_2982at 296.065 kb on - strand, within EX28DRAFT_2982at 296.065 kb on - strand, within EX28DRAFT_2982at 296.279 kb on - strandat 296.483 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.486 kb on - strand, within EX28DRAFT_2983at 296.693 kb on + strand, within EX28DRAFT_2983at 296.693 kb on + strand, within EX28DRAFT_2983at 296.807 kb on + strand, within EX28DRAFT_2983at 296.807 kb on + strand, within EX28DRAFT_2983at 296.808 kb on - strand, within EX28DRAFT_2983at 296.808 kb on - strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.954 kb on + strandat 296.992 kb on + strandat 296.992 kb on + strandat 296.992 kb on + strandat 296.993 kb on - strandat 296.993 kb on - strandat 297.011 kb on + strandat 297.011 kb on + strandat 297.011 kb on + strandat 297.041 kb on - strandat 297.059 kb on + strandat 297.059 kb on + strandat 297.077 kb on - strandat 297.159 kb on + strand, within EX28DRAFT_2984at 297.159 kb on + strand, within EX28DRAFT_2984at 297.225 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.445 kb on + strand, within EX28DRAFT_2984at 297.580 kb on + strand, within EX28DRAFT_2984at 297.901 kb on - strand, within EX28DRAFT_2985at 297.903 kb on - strand, within EX28DRAFT_2985

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
295,291 + EX28DRAFT_2981 0.76 -0.9
295,295 + EX28DRAFT_2981 0.76 -0.4
295,295 + EX28DRAFT_2981 0.76 -1.6
295,296 - EX28DRAFT_2981 0.76 -0.6
295,310 + EX28DRAFT_2981 0.77 +0.2
295,467 - EX28DRAFT_2981 0.88 +0.5
295,497 + +0.2
295,574 + +0.2
295,574 + -0.0
295,574 + -0.9
295,574 + +0.4
295,575 - -1.1
295,575 - +0.1
295,583 + -0.2
295,676 + +0.7
295,786 + EX28DRAFT_2982 0.19 +0.4
295,798 - EX28DRAFT_2982 0.22 +0.3
295,798 - EX28DRAFT_2982 0.22 -0.5
295,852 + EX28DRAFT_2982 0.33 +1.4
296,029 - EX28DRAFT_2982 0.68 -0.1
296,065 - EX28DRAFT_2982 0.75 -0.8
296,065 - EX28DRAFT_2982 0.75 +0.4
296,279 - -0.7
296,483 + EX28DRAFT_2983 0.28 -0.7
296,485 + EX28DRAFT_2983 0.29 -1.3
296,485 + EX28DRAFT_2983 0.29 +0.8
296,485 + EX28DRAFT_2983 0.29 -0.2
296,486 - EX28DRAFT_2983 0.29 +0.4
296,693 + EX28DRAFT_2983 0.58 -0.5
296,693 + EX28DRAFT_2983 0.58 +1.3
296,807 + EX28DRAFT_2983 0.74 -1.2
296,807 + EX28DRAFT_2983 0.74 -0.4
296,808 - EX28DRAFT_2983 0.74 -0.5
296,808 - EX28DRAFT_2983 0.74 -1.7
296,813 + EX28DRAFT_2983 0.75 -0.2
296,813 + EX28DRAFT_2983 0.75 -0.0
296,813 + EX28DRAFT_2983 0.75 +0.1
296,813 + EX28DRAFT_2983 0.75 -1.0
296,814 - EX28DRAFT_2983 0.75 -0.3
296,814 - EX28DRAFT_2983 0.75 -0.3
296,814 - EX28DRAFT_2983 0.75 -1.1
296,954 + -0.5
296,992 + -1.4
296,992 + -0.3
296,992 + -0.3
296,993 - +0.2
296,993 - -0.1
297,011 + -0.3
297,011 + -1.4
297,011 + -0.0
297,041 - +0.3
297,059 + +1.2
297,059 + +0.7
297,077 - +0.5
297,159 + EX28DRAFT_2984 0.16 -0.6
297,159 + EX28DRAFT_2984 0.16 +1.2
297,225 + EX28DRAFT_2984 0.25 +0.1
297,351 + EX28DRAFT_2984 0.42 -1.8
297,351 + EX28DRAFT_2984 0.42 -0.4
297,351 + EX28DRAFT_2984 0.42 +0.1
297,351 + EX28DRAFT_2984 0.42 -0.7
297,351 + EX28DRAFT_2984 0.42 +0.1
297,352 - EX28DRAFT_2984 0.42 +0.8
297,352 - EX28DRAFT_2984 0.42 +0.6
297,352 - EX28DRAFT_2984 0.42 +1.8
297,445 + EX28DRAFT_2984 0.55 -0.1
297,580 + EX28DRAFT_2984 0.74 +0.1
297,901 - EX28DRAFT_2985 0.11 -0.3
297,903 - EX28DRAFT_2985 0.12 +0.3

Or see this region's nucleotide sequence