Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2949 and EX28DRAFT_2950 are separated by 110 nucleotides EX28DRAFT_2950 and EX28DRAFT_2951 are separated by 165 nucleotides EX28DRAFT_2951 and EX28DRAFT_2952 are separated by 51 nucleotides
EX28DRAFT_2949: EX28DRAFT_2949 - folate-binding protein YgfZ, at 258,486 to 259,466
_2949
EX28DRAFT_2950: EX28DRAFT_2950 - channel protein, hemolysin III family, at 259,577 to 260,236
_2950
EX28DRAFT_2951: EX28DRAFT_2951 - Uncharacterized protein conserved in bacteria, at 260,402 to 260,713
_2951
EX28DRAFT_2952: EX28DRAFT_2952 - transcriptional regulator, RpiR family, at 260,765 to 261,496
_2952
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.472 kb on + strand at 259.472 kb on + strand at 259.472 kb on + strand at 259.511 kb on + strand at 259.593 kb on + strand at 259.599 kb on + strand at 259.599 kb on + strand at 259.600 kb on - strand at 259.600 kb on - strand at 259.662 kb on + strand, within EX28DRAFT_2950 at 259.705 kb on - strand, within EX28DRAFT_2950 at 259.718 kb on + strand, within EX28DRAFT_2950 at 259.767 kb on + strand, within EX28DRAFT_2950 at 259.768 kb on - strand, within EX28DRAFT_2950 at 259.803 kb on + strand, within EX28DRAFT_2950 at 259.803 kb on + strand, within EX28DRAFT_2950 at 259.849 kb on + strand, within EX28DRAFT_2950 at 259.849 kb on + strand, within EX28DRAFT_2950 at 259.941 kb on + strand, within EX28DRAFT_2950 at 259.941 kb on + strand, within EX28DRAFT_2950 at 259.941 kb on + strand, within EX28DRAFT_2950 at 259.942 kb on - strand, within EX28DRAFT_2950 at 259.942 kb on - strand, within EX28DRAFT_2950 at 259.962 kb on + strand, within EX28DRAFT_2950 at 259.963 kb on - strand, within EX28DRAFT_2950 at 259.963 kb on - strand, within EX28DRAFT_2950 at 259.966 kb on + strand, within EX28DRAFT_2950 at 259.966 kb on + strand, within EX28DRAFT_2950 at 260.057 kb on - strand, within EX28DRAFT_2950 at 260.076 kb on + strand, within EX28DRAFT_2950 at 260.129 kb on + strand, within EX28DRAFT_2950 at 260.276 kb on + strand at 260.276 kb on + strand at 260.280 kb on + strand at 260.280 kb on + strand at 260.280 kb on + strand at 260.280 kb on + strand at 260.281 kb on - strand at 260.281 kb on - strand at 260.281 kb on - strand at 260.286 kb on - strand at 260.351 kb on - strand at 260.364 kb on + strand at 260.477 kb on - strand, within EX28DRAFT_2951 at 260.477 kb on - strand, within EX28DRAFT_2951 at 260.568 kb on + strand, within EX28DRAFT_2951 at 260.717 kb on - strand at 260.752 kb on - strand at 260.822 kb on + strand at 260.822 kb on + strand at 260.822 kb on + strand at 260.822 kb on + strand at 260.823 kb on - strand at 260.823 kb on - strand at 260.823 kb on - strand at 260.823 kb on - strand at 260.852 kb on + strand, within EX28DRAFT_2952 at 260.852 kb on + strand, within EX28DRAFT_2952 at 260.852 kb on + strand, within EX28DRAFT_2952 at 260.853 kb on - strand, within EX28DRAFT_2952 at 260.853 kb on - strand, within EX28DRAFT_2952 at 260.853 kb on - strand, within EX28DRAFT_2952 at 260.853 kb on - strand, within EX28DRAFT_2952 at 260.927 kb on - strand, within EX28DRAFT_2952 at 261.066 kb on + strand, within EX28DRAFT_2952 at 261.082 kb on + strand, within EX28DRAFT_2952 at 261.106 kb on + strand, within EX28DRAFT_2952 at 261.108 kb on + strand, within EX28DRAFT_2952 at 261.203 kb on + strand, within EX28DRAFT_2952
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 259,472 + -0.3 259,472 + +0.2 259,472 + +0.5 259,511 + +2.0 259,593 + -0.6 259,599 + +0.0 259,599 + -0.5 259,600 - +0.8 259,600 - -0.9 259,662 + EX28DRAFT_2950 0.13 -0.5 259,705 - EX28DRAFT_2950 0.19 +0.1 259,718 + EX28DRAFT_2950 0.21 -2.3 259,767 + EX28DRAFT_2950 0.29 -0.5 259,768 - EX28DRAFT_2950 0.29 +0.1 259,803 + EX28DRAFT_2950 0.34 -0.4 259,803 + EX28DRAFT_2950 0.34 +0.0 259,849 + EX28DRAFT_2950 0.41 +0.4 259,849 + EX28DRAFT_2950 0.41 -0.2 259,941 + EX28DRAFT_2950 0.55 +0.2 259,941 + EX28DRAFT_2950 0.55 -3.3 259,941 + EX28DRAFT_2950 0.55 -3.2 259,942 - EX28DRAFT_2950 0.55 +0.1 259,942 - EX28DRAFT_2950 0.55 +0.0 259,962 + EX28DRAFT_2950 0.58 +0.5 259,963 - EX28DRAFT_2950 0.58 -0.0 259,963 - EX28DRAFT_2950 0.58 -0.0 259,966 + EX28DRAFT_2950 0.59 +0.1 259,966 + EX28DRAFT_2950 0.59 +0.2 260,057 - EX28DRAFT_2950 0.73 -0.1 260,076 + EX28DRAFT_2950 0.76 -0.2 260,129 + EX28DRAFT_2950 0.84 -1.3 260,276 + -0.9 260,276 + +0.3 260,280 + -0.5 260,280 + +0.2 260,280 + -0.4 260,280 + -0.1 260,281 - +0.4 260,281 - -0.1 260,281 - +0.2 260,286 - +0.4 260,351 - -0.6 260,364 + +0.2 260,477 - EX28DRAFT_2951 0.24 +0.7 260,477 - EX28DRAFT_2951 0.24 +0.2 260,568 + EX28DRAFT_2951 0.53 +0.0 260,717 - +0.1 260,752 - +0.3 260,822 + +0.8 260,822 + -0.6 260,822 + -0.9 260,822 + -0.5 260,823 - -0.8 260,823 - +0.2 260,823 - -0.7 260,823 - +1.1 260,852 + EX28DRAFT_2952 0.12 -2.9 260,852 + EX28DRAFT_2952 0.12 -0.3 260,852 + EX28DRAFT_2952 0.12 -0.1 260,853 - EX28DRAFT_2952 0.12 -0.8 260,853 - EX28DRAFT_2952 0.12 +0.0 260,853 - EX28DRAFT_2952 0.12 -0.2 260,853 - EX28DRAFT_2952 0.12 +1.1 260,927 - EX28DRAFT_2952 0.22 -0.2 261,066 + EX28DRAFT_2952 0.41 -0.2 261,082 + EX28DRAFT_2952 0.43 -0.4 261,106 + EX28DRAFT_2952 0.47 +0.2 261,108 + EX28DRAFT_2952 0.47 -0.1 261,203 + EX28DRAFT_2952 0.60 -0.2
Or see this region's nucleotide sequence