Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2943 and EX28DRAFT_2944 are separated by 5 nucleotides EX28DRAFT_2944 and EX28DRAFT_2945 are separated by 28 nucleotides
EX28DRAFT_2943: EX28DRAFT_2943 - single-stranded-DNA-specific exonuclease RecJ, at 253,527 to 255,260
_2943
EX28DRAFT_2944: EX28DRAFT_2944 - Protein-disulfide isomerase, at 255,266 to 255,979
_2944
EX28DRAFT_2945: EX28DRAFT_2945 - tyrosine recombinase XerD, at 256,008 to 256,904
_2945
Position (kb) 255
256 Strain fitness (log2 ratio) -2
-1
0
1 at 254.364 kb on - strand, within EX28DRAFT_2943 at 254.364 kb on - strand, within EX28DRAFT_2943 at 254.364 kb on - strand, within EX28DRAFT_2943 at 254.505 kb on + strand, within EX28DRAFT_2943 at 254.526 kb on - strand, within EX28DRAFT_2943 at 254.534 kb on + strand, within EX28DRAFT_2943 at 254.534 kb on + strand, within EX28DRAFT_2943 at 254.535 kb on - strand, within EX28DRAFT_2943 at 254.587 kb on + strand, within EX28DRAFT_2943 at 254.588 kb on - strand, within EX28DRAFT_2943 at 254.600 kb on + strand, within EX28DRAFT_2943 at 254.948 kb on - strand, within EX28DRAFT_2943 at 255.268 kb on - strand at 255.272 kb on - strand at 255.503 kb on - strand, within EX28DRAFT_2944 at 255.585 kb on + strand, within EX28DRAFT_2944 at 255.673 kb on + strand, within EX28DRAFT_2944 at 255.763 kb on - strand, within EX28DRAFT_2944 at 255.934 kb on + strand at 255.979 kb on + strand at 256.170 kb on + strand, within EX28DRAFT_2945 at 256.477 kb on + strand, within EX28DRAFT_2945 at 256.478 kb on - strand, within EX28DRAFT_2945 at 256.543 kb on - strand, within EX28DRAFT_2945 at 256.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 254,364 - EX28DRAFT_2943 0.48 +0.2 254,364 - EX28DRAFT_2943 0.48 +0.2 254,364 - EX28DRAFT_2943 0.48 +0.6 254,505 + EX28DRAFT_2943 0.56 -0.4 254,526 - EX28DRAFT_2943 0.58 -1.9 254,534 + EX28DRAFT_2943 0.58 -0.5 254,534 + EX28DRAFT_2943 0.58 -0.3 254,535 - EX28DRAFT_2943 0.58 -0.9 254,587 + EX28DRAFT_2943 0.61 -0.8 254,588 - EX28DRAFT_2943 0.61 -1.5 254,600 + EX28DRAFT_2943 0.62 +1.2 254,948 - EX28DRAFT_2943 0.82 -0.2 255,268 - +0.2 255,272 - -0.4 255,503 - EX28DRAFT_2944 0.33 +0.3 255,585 + EX28DRAFT_2944 0.45 -1.1 255,673 + EX28DRAFT_2944 0.57 -1.1 255,763 - EX28DRAFT_2944 0.70 -0.6 255,934 + -0.3 255,979 + -0.4 256,170 + EX28DRAFT_2945 0.18 -0.8 256,477 + EX28DRAFT_2945 0.52 +0.7 256,478 - EX28DRAFT_2945 0.52 -0.3 256,543 - EX28DRAFT_2945 0.60 -0.4 256,936 + +0.7
Or see this region's nucleotide sequence