Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2940

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2938 and EX28DRAFT_2939 are separated by 80 nucleotidesEX28DRAFT_2939 and EX28DRAFT_2940 are separated by 163 nucleotidesEX28DRAFT_2940 and EX28DRAFT_2941 are separated by 38 nucleotides EX28DRAFT_2938: EX28DRAFT_2938 - tRNA, at 249,169 to 249,242 _2938 EX28DRAFT_2939: EX28DRAFT_2939 - Membrane proteins related to metalloendopeptidases, at 249,323 to 250,066 _2939 EX28DRAFT_2940: EX28DRAFT_2940 - isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2), at 250,230 to 250,772 _2940 EX28DRAFT_2941: EX28DRAFT_2941 - Lysyl-tRNA synthetase (class II), at 250,811 to 252,328 _2941 Position (kb) 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1at 249.264 kb on + strandat 249.264 kb on + strandat 249.264 kb on + strandat 249.283 kb on + strandat 249.283 kb on + strandat 249.284 kb on - strandat 249.284 kb on - strandat 249.388 kb on - strandat 249.505 kb on - strand, within EX28DRAFT_2939at 249.532 kb on + strand, within EX28DRAFT_2939at 249.532 kb on + strand, within EX28DRAFT_2939at 249.532 kb on + strand, within EX28DRAFT_2939at 249.533 kb on - strand, within EX28DRAFT_2939at 249.533 kb on - strand, within EX28DRAFT_2939at 249.576 kb on + strand, within EX28DRAFT_2939at 249.577 kb on - strand, within EX28DRAFT_2939at 249.603 kb on + strand, within EX28DRAFT_2939at 249.846 kb on + strand, within EX28DRAFT_2939at 249.846 kb on + strand, within EX28DRAFT_2939at 249.847 kb on - strand, within EX28DRAFT_2939at 249.847 kb on - strand, within EX28DRAFT_2939at 249.957 kb on + strand, within EX28DRAFT_2939at 249.958 kb on - strand, within EX28DRAFT_2939at 249.958 kb on - strand, within EX28DRAFT_2939at 250.004 kb on + strandat 250.098 kb on + strandat 250.098 kb on + strandat 250.099 kb on - strandat 250.119 kb on + strandat 250.164 kb on - strandat 250.174 kb on + strandat 250.175 kb on - strandat 250.175 kb on - strandat 250.176 kb on + strandat 250.176 kb on + strandat 250.251 kb on - strandat 250.312 kb on + strand, within EX28DRAFT_2940at 250.312 kb on + strand, within EX28DRAFT_2940at 250.312 kb on + strand, within EX28DRAFT_2940at 250.312 kb on + strand, within EX28DRAFT_2940at 250.313 kb on - strand, within EX28DRAFT_2940at 250.313 kb on - strand, within EX28DRAFT_2940at 250.313 kb on - strand, within EX28DRAFT_2940at 250.316 kb on + strand, within EX28DRAFT_2940at 250.647 kb on + strand, within EX28DRAFT_2940at 250.647 kb on + strand, within EX28DRAFT_2940at 250.706 kb on + strand, within EX28DRAFT_2940at 250.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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249,264 + -0.3
249,264 + -0.8
249,264 + +0.5
249,283 + -0.5
249,283 + +0.2
249,284 - -0.3
249,284 - -0.8
249,388 - -0.9
249,505 - EX28DRAFT_2939 0.24 +0.5
249,532 + EX28DRAFT_2939 0.28 +0.9
249,532 + EX28DRAFT_2939 0.28 +0.3
249,532 + EX28DRAFT_2939 0.28 -0.8
249,533 - EX28DRAFT_2939 0.28 +0.1
249,533 - EX28DRAFT_2939 0.28 -1.4
249,576 + EX28DRAFT_2939 0.34 +0.2
249,577 - EX28DRAFT_2939 0.34 -3.1
249,603 + EX28DRAFT_2939 0.38 -0.6
249,846 + EX28DRAFT_2939 0.70 +0.2
249,846 + EX28DRAFT_2939 0.70 +0.1
249,847 - EX28DRAFT_2939 0.70 -0.5
249,847 - EX28DRAFT_2939 0.70 -0.8
249,957 + EX28DRAFT_2939 0.85 -0.2
249,958 - EX28DRAFT_2939 0.85 -0.1
249,958 - EX28DRAFT_2939 0.85 -0.3
250,004 + +0.1
250,098 + +0.4
250,098 + -0.0
250,099 - -0.4
250,119 + -2.8
250,164 - -0.0
250,174 + -0.2
250,175 - +0.2
250,175 - +1.0
250,176 + -0.2
250,176 + +0.8
250,251 - -0.4
250,312 + EX28DRAFT_2940 0.15 +0.4
250,312 + EX28DRAFT_2940 0.15 +0.2
250,312 + EX28DRAFT_2940 0.15 +0.6
250,312 + EX28DRAFT_2940 0.15 -0.4
250,313 - EX28DRAFT_2940 0.15 -0.2
250,313 - EX28DRAFT_2940 0.15 -0.2
250,313 - EX28DRAFT_2940 0.15 +0.1
250,316 + EX28DRAFT_2940 0.16 -0.3
250,647 + EX28DRAFT_2940 0.77 -1.2
250,647 + EX28DRAFT_2940 0.77 +0.0
250,706 + EX28DRAFT_2940 0.88 -1.9
250,797 + -1.4

Or see this region's nucleotide sequence