Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2934 and EX28DRAFT_2935 overlap by 8 nucleotides EX28DRAFT_2935 and EX28DRAFT_2936 are separated by 777 nucleotides
EX28DRAFT_2934: EX28DRAFT_2934 - ABC-type Fe3+ transport system, permease component, at 244,134 to 245,903
_2934
EX28DRAFT_2935: EX28DRAFT_2935 - ABC-type spermidine/putrescine transport systems, ATPase components, at 245,896 to 246,966
_2935
EX28DRAFT_2936: EX28DRAFT_2936 - Uracil DNA glycosylase superfamily, at 247,744 to 248,346
_2936
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 245.269 kb on - strand, within EX28DRAFT_2934 at 245.328 kb on + strand, within EX28DRAFT_2934 at 245.532 kb on + strand, within EX28DRAFT_2934 at 245.567 kb on + strand, within EX28DRAFT_2934 at 245.567 kb on + strand, within EX28DRAFT_2934 at 245.567 kb on + strand, within EX28DRAFT_2934 at 245.568 kb on - strand, within EX28DRAFT_2934 at 245.727 kb on + strand at 245.742 kb on + strand at 245.742 kb on + strand at 245.742 kb on + strand at 245.743 kb on - strand at 245.857 kb on + strand at 245.893 kb on + strand at 245.893 kb on + strand at 245.894 kb on - strand at 245.951 kb on + strand at 246.088 kb on - strand, within EX28DRAFT_2935 at 246.090 kb on + strand, within EX28DRAFT_2935 at 246.091 kb on - strand, within EX28DRAFT_2935 at 246.139 kb on - strand, within EX28DRAFT_2935 at 246.362 kb on - strand, within EX28DRAFT_2935 at 246.535 kb on - strand, within EX28DRAFT_2935 at 246.535 kb on - strand, within EX28DRAFT_2935 at 246.577 kb on + strand, within EX28DRAFT_2935 at 246.577 kb on + strand, within EX28DRAFT_2935 at 246.578 kb on - strand, within EX28DRAFT_2935 at 246.578 kb on - strand, within EX28DRAFT_2935 at 246.578 kb on - strand, within EX28DRAFT_2935 at 246.823 kb on + strand, within EX28DRAFT_2935 at 246.823 kb on + strand, within EX28DRAFT_2935 at 246.823 kb on + strand, within EX28DRAFT_2935 at 246.844 kb on + strand, within EX28DRAFT_2935 at 246.887 kb on - strand at 246.980 kb on - strand at 247.096 kb on + strand at 247.163 kb on + strand at 247.188 kb on + strand at 247.199 kb on - strand at 247.224 kb on - strand at 247.393 kb on + strand at 247.397 kb on - strand at 247.425 kb on + strand at 247.438 kb on + strand at 247.477 kb on + strand at 247.479 kb on + strand at 247.492 kb on + strand at 247.561 kb on + strand at 247.662 kb on + strand at 247.663 kb on - strand at 247.663 kb on - strand at 247.703 kb on - strand at 247.703 kb on - strand at 247.778 kb on + strand at 247.812 kb on + strand, within EX28DRAFT_2936 at 247.814 kb on + strand, within EX28DRAFT_2936 at 247.831 kb on + strand, within EX28DRAFT_2936 at 247.844 kb on + strand, within EX28DRAFT_2936 at 247.868 kb on + strand, within EX28DRAFT_2936 at 247.869 kb on - strand, within EX28DRAFT_2936 at 247.869 kb on - strand, within EX28DRAFT_2936 at 247.893 kb on - strand, within EX28DRAFT_2936
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 245,269 - EX28DRAFT_2934 0.64 +0.2 245,328 + EX28DRAFT_2934 0.67 -0.3 245,532 + EX28DRAFT_2934 0.79 -0.8 245,567 + EX28DRAFT_2934 0.81 +0.4 245,567 + EX28DRAFT_2934 0.81 +0.6 245,567 + EX28DRAFT_2934 0.81 +0.3 245,568 - EX28DRAFT_2934 0.81 +0.7 245,727 + +0.1 245,742 + +0.0 245,742 + -0.9 245,742 + +0.7 245,743 - -0.1 245,857 + -0.1 245,893 + -0.9 245,893 + -1.6 245,894 - -0.8 245,951 + +1.0 246,088 - EX28DRAFT_2935 0.18 -1.8 246,090 + EX28DRAFT_2935 0.18 -0.4 246,091 - EX28DRAFT_2935 0.18 +0.2 246,139 - EX28DRAFT_2935 0.23 -0.3 246,362 - EX28DRAFT_2935 0.44 +0.4 246,535 - EX28DRAFT_2935 0.60 -0.5 246,535 - EX28DRAFT_2935 0.60 -0.4 246,577 + EX28DRAFT_2935 0.64 -2.2 246,577 + EX28DRAFT_2935 0.64 -1.7 246,578 - EX28DRAFT_2935 0.64 -0.2 246,578 - EX28DRAFT_2935 0.64 +0.5 246,578 - EX28DRAFT_2935 0.64 +0.2 246,823 + EX28DRAFT_2935 0.87 +0.0 246,823 + EX28DRAFT_2935 0.87 +0.1 246,823 + EX28DRAFT_2935 0.87 +0.1 246,844 + EX28DRAFT_2935 0.89 +0.2 246,887 - +0.6 246,980 - +0.5 247,096 + -0.2 247,163 + +0.0 247,188 + -1.2 247,199 - -1.0 247,224 - +1.5 247,393 + -0.0 247,397 - +2.5 247,425 + +0.2 247,438 + -1.2 247,477 + +0.5 247,479 + -0.3 247,492 + -0.0 247,561 + -0.3 247,662 + -0.3 247,663 - +0.4 247,663 - -0.1 247,703 - -0.9 247,703 - -0.5 247,778 + -0.3 247,812 + EX28DRAFT_2936 0.11 +0.3 247,814 + EX28DRAFT_2936 0.12 +0.4 247,831 + EX28DRAFT_2936 0.14 +0.4 247,844 + EX28DRAFT_2936 0.17 -0.3 247,868 + EX28DRAFT_2936 0.21 -0.9 247,869 - EX28DRAFT_2936 0.21 +0.2 247,869 - EX28DRAFT_2936 0.21 +0.4 247,893 - EX28DRAFT_2936 0.25 -0.5
Or see this region's nucleotide sequence