Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2926 and EX28DRAFT_2927 are separated by 37 nucleotides EX28DRAFT_2927 and EX28DRAFT_2928 are separated by 121 nucleotides EX28DRAFT_2928 and EX28DRAFT_2929 are separated by 27 nucleotides EX28DRAFT_2929 and EX28DRAFT_2930 are separated by 10 nucleotides EX28DRAFT_2930 and EX28DRAFT_2931 are separated by 176 nucleotides
EX28DRAFT_2926: EX28DRAFT_2926 - Amino acid permeases, at 237,272 to 238,501
_2926
EX28DRAFT_2927: EX28DRAFT_2927 - Transcriptional regulators, at 238,539 to 239,009
_2927
EX28DRAFT_2928: EX28DRAFT_2928 - Putative threonine efflux protein, at 239,131 to 239,736
_2928
EX28DRAFT_2929: EX28DRAFT_2929 - Predicted acetyltransferase, at 239,764 to 240,036
_2929
EX28DRAFT_2930: EX28DRAFT_2930 - Uncharacterized conserved protein, at 240,047 to 240,277
_2930
EX28DRAFT_2931: EX28DRAFT_2931 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 240,454 to 242,091
_2931
Position (kb) 239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 238.347 kb on - strand, within EX28DRAFT_2926 at 238.407 kb on - strand at 238.407 kb on - strand at 238.499 kb on + strand at 238.604 kb on + strand, within EX28DRAFT_2927 at 238.605 kb on - strand, within EX28DRAFT_2927 at 238.605 kb on - strand, within EX28DRAFT_2927 at 238.956 kb on + strand, within EX28DRAFT_2927 at 238.974 kb on + strand at 239.136 kb on + strand at 239.136 kb on + strand at 239.137 kb on - strand at 239.172 kb on + strand at 239.306 kb on + strand, within EX28DRAFT_2928 at 239.595 kb on + strand, within EX28DRAFT_2928 at 239.595 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.605 kb on + strand, within EX28DRAFT_2928 at 239.606 kb on - strand, within EX28DRAFT_2928 at 239.606 kb on - strand, within EX28DRAFT_2928 at 239.669 kb on + strand, within EX28DRAFT_2928 at 239.711 kb on + strand at 239.717 kb on + strand at 239.717 kb on + strand at 239.718 kb on - strand at 239.784 kb on - strand at 239.784 kb on - strand at 239.797 kb on - strand, within EX28DRAFT_2929 at 239.965 kb on + strand, within EX28DRAFT_2929 at 239.966 kb on - strand, within EX28DRAFT_2929 at 239.966 kb on - strand, within EX28DRAFT_2929 at 240.006 kb on - strand, within EX28DRAFT_2929 at 240.060 kb on + strand at 240.099 kb on - strand, within EX28DRAFT_2930 at 240.154 kb on + strand, within EX28DRAFT_2930 at 240.154 kb on + strand, within EX28DRAFT_2930 at 240.154 kb on + strand, within EX28DRAFT_2930 at 240.184 kb on + strand, within EX28DRAFT_2930 at 240.216 kb on + strand, within EX28DRAFT_2930 at 240.263 kb on + strand at 240.264 kb on - strand at 240.291 kb on + strand at 240.295 kb on + strand at 240.296 kb on - strand at 240.296 kb on - strand at 240.298 kb on + strand at 240.298 kb on + strand at 240.298 kb on + strand at 240.340 kb on + strand at 240.340 kb on + strand at 240.340 kb on + strand at 240.341 kb on - strand at 240.438 kb on - strand at 240.491 kb on + strand at 240.518 kb on + strand at 240.519 kb on - strand at 240.521 kb on + strand at 240.521 kb on + strand at 240.522 kb on - strand at 240.522 kb on - strand at 240.654 kb on + strand, within EX28DRAFT_2931 at 240.654 kb on + strand, within EX28DRAFT_2931 at 240.655 kb on - strand, within EX28DRAFT_2931 at 240.710 kb on - strand, within EX28DRAFT_2931
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 238,347 - EX28DRAFT_2926 0.87 -0.2 238,407 - -0.1 238,407 - -1.2 238,499 + +0.0 238,604 + EX28DRAFT_2927 0.14 +0.3 238,605 - EX28DRAFT_2927 0.14 -0.4 238,605 - EX28DRAFT_2927 0.14 -0.6 238,956 + EX28DRAFT_2927 0.89 -0.0 238,974 + +0.4 239,136 + +0.1 239,136 + -0.2 239,137 - -0.4 239,172 + +0.6 239,306 + EX28DRAFT_2928 0.29 -0.1 239,595 + EX28DRAFT_2928 0.77 +0.4 239,595 + EX28DRAFT_2928 0.77 +0.7 239,605 + EX28DRAFT_2928 0.78 -1.4 239,605 + EX28DRAFT_2928 0.78 -2.1 239,605 + EX28DRAFT_2928 0.78 -1.2 239,606 - EX28DRAFT_2928 0.78 +0.3 239,606 - EX28DRAFT_2928 0.78 -0.3 239,669 + EX28DRAFT_2928 0.89 +0.1 239,711 + -0.5 239,717 + +0.0 239,717 + +0.4 239,718 - +0.7 239,784 - +0.4 239,784 - -0.3 239,797 - EX28DRAFT_2929 0.12 +1.2 239,965 + EX28DRAFT_2929 0.74 +0.0 239,966 - EX28DRAFT_2929 0.74 -1.0 239,966 - EX28DRAFT_2929 0.74 +0.4 240,006 - EX28DRAFT_2929 0.89 -0.0 240,060 + +0.8 240,099 - EX28DRAFT_2930 0.23 +0.1 240,154 + EX28DRAFT_2930 0.46 -0.9 240,154 + EX28DRAFT_2930 0.46 -0.6 240,154 + EX28DRAFT_2930 0.46 -0.3 240,184 + EX28DRAFT_2930 0.59 -1.1 240,216 + EX28DRAFT_2930 0.73 +0.3 240,263 + +0.1 240,264 - +0.1 240,291 + -0.1 240,295 + -1.3 240,296 - -2.9 240,296 - -0.5 240,298 + +1.0 240,298 + -0.4 240,298 + +1.0 240,340 + +0.3 240,340 + -2.3 240,340 + -0.1 240,341 - -0.6 240,438 - -2.5 240,491 + +0.3 240,518 + +1.5 240,519 - -0.6 240,521 + +0.7 240,521 + -0.3 240,522 - -0.7 240,522 - -0.8 240,654 + EX28DRAFT_2931 0.12 -0.4 240,654 + EX28DRAFT_2931 0.12 +0.7 240,655 - EX28DRAFT_2931 0.12 +0.2 240,710 - EX28DRAFT_2931 0.16 +0.3
Or see this region's nucleotide sequence